Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EIA51_RS05475 Genome accession   NZ_CP034110
Coordinates   1125287..1127323 (+) Length   678 a.a.
NCBI ID   WP_035684933.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain FARPER-174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120287..1132323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIA51_RS05455 (EIA51_05455) zevA 1121964..1122608 (+) 645 WP_081637502.1 zinc transporter binding subunit ZevA -
  EIA51_RS05460 (EIA51_05460) zevB 1122599..1123615 (+) 1017 WP_035684942.1 zinc transporter permease subunit ZevB -
  EIA51_RS05465 (EIA51_05465) - 1123667..1124638 (-) 972 WP_035684939.1 calcium/sodium antiporter -
  EIA51_RS05475 (EIA51_05475) uvrB 1125287..1127323 (+) 2037 WP_035684933.1 excinuclease ABC subunit UvrB Machinery gene
  EIA51_RS05480 (EIA51_05480) - 1127408..1128151 (+) 744 WP_124994820.1 glycosyltransferase family 25 protein -
  EIA51_RS05490 (EIA51_05490) - 1128543..1129247 (+) 705 WP_124994821.1 glycosyltransferase family 25 protein -
  EIA51_RS05495 (EIA51_05495) - 1129240..1130292 (+) 1053 WP_035684927.1 glycosyltransferase family 9 protein -
  EIA51_RS05500 (EIA51_05500) - 1130310..1131179 (-) 870 WP_035684924.1 fructosamine kinase family protein -
  EIA51_RS05505 (EIA51_05505) - 1131331..1131396 (+) 66 Protein_1066 glutaredoxin -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 77286.23 Da        Isoelectric Point: 5.4439

>NTDB_id=287979 EIA51_RS05475 WP_035684933.1 1125287..1127323(+) (uvrB) [Avibacterium paragallinarum strain FARPER-174]
MSNKIKGKPFILHSDFSPSGDQPQAIEMLCENLNAGLAHQTLLGVTGSGKTFTIANVIAKLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
KMMLHLQTGAIINQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDNQAIRIELFDDEIERLSLFDPLTGANF
GAVPRYTIYPKTHYVTPRERILEAIDQIKIELAKRREYFIKENKLLEEQRITQRTLFDIEMMNELGYCSGIENYSRYLSG
RKEGDPPPTLFDYLPLDGLLIIDESHVTIPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLKFEEFERLAPQTIYVSAT
PGPYELEKSGSEIIDQVVRPTGLLDPVIEIRPVAIQVDDLLSEAKQRADKNERVLVTTLTKRMAEDLTDYLEEHGVRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
HITKSMEKAITETNRRREKQMKYNAEQGIVPQALNKKVGELLDIGQGATNNKAKSKQKQKTVSEPTALYQPLNAKEFQQQ
VKKLEQQMYKHAQDLEFEKAAAVRDQLQQLRERFLDLK

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=287979 EIA51_RS05475 WP_035684933.1 1125287..1127323(+) (uvrB) [Avibacterium paragallinarum strain FARPER-174]
ATGAGTAACAAAATTAAGGGCAAACCTTTTATTCTCCATTCTGATTTTTCACCTTCAGGTGATCAACCACAGGCGATCGA
AATGCTCTGTGAAAATCTTAATGCTGGTTTAGCACATCAAACCCTACTTGGTGTAACGGGGTCAGGAAAAACGTTCACAA
TCGCCAACGTGATTGCAAAATTAAACCGTCCAGCAATGTTACTTGCTCCAAATAAAACCCTTGCCGCTCAACTTTATGCA
GAAATGAAAGCTTTCTTTCCTGAAAATGCGGTGGAATATTTTGTGTCGTATTATGATTATTACCAGCCTGAAGCCTATGT
ACCGAGTAGTGATACCTTTATTGAAAAAGATGCTTCAGTTAATGATCAAATTGAACAAATGCGATTGTCTGCCACGAAAT
CTTTTTTAGAACGCCGCGATACCATCGTTGTTGCCTCAGTGTCTGCTATTTATGGATTGGGTGATCCGGATAGCTACCTC
AAAATGATGTTGCATTTGCAAACAGGAGCGATTATTAATCAGCGTCAAATTTTGGCAAAACTGGCGGAGTTGCAATATAC
CCGTAATGATCAAGCTTTCCAACGAGGAACATTCCGCGTACGTGGTGAAATTATTGATATATTTCCTGCGGAATCGGATA
ACCAAGCTATTCGCATTGAATTATTTGATGACGAAATCGAACGGCTCAGCTTATTTGATCCGCTGACTGGAGCAAATTTT
GGTGCTGTGCCACGCTACACGATCTACCCGAAAACGCATTATGTCACCCCTCGTGAACGGATTTTAGAAGCTATTGATCA
AATTAAAATTGAGCTGGCTAAACGGCGAGAATATTTCATCAAAGAAAATAAATTATTAGAAGAACAACGTATCACACAAC
GAACATTGTTTGATATTGAAATGATGAACGAGCTAGGCTACTGTTCAGGAATTGAAAATTACTCCCGCTATTTATCGGGA
CGTAAGGAGGGCGATCCGCCACCAACCTTGTTTGATTATTTGCCTCTTGATGGCTTACTGATTATTGATGAATCGCACGT
TACCATTCCCCAAATCGGCGGAATGTACCGTGGCGACCGCTCACGCAAAGAAACGTTAGTGGAATATGGCTTCCGCTTAC
CATCAGCACTGGATAACCGCCCATTAAAATTTGAAGAATTTGAACGCTTAGCACCGCAAACGATTTATGTTTCTGCCACG
CCGGGCCCTTACGAATTAGAAAAATCGGGCAGTGAAATTATCGATCAAGTGGTGCGACCAACGGGCTTGCTTGATCCTGT
AATTGAAATTCGCCCTGTTGCCATTCAAGTTGATGATTTGCTTTCTGAAGCAAAACAAAGAGCGGATAAAAATGAACGGG
TTTTAGTTACCACGCTCACCAAACGAATGGCGGAAGATCTCACGGATTACCTTGAAGAACACGGCGTGCGTGTGCGTTAT
TTGCATTCCGATATTGACACGGTGGAACGAGTTGAAATTATCCGCGATCTCCGCTTAGGGGAATTCGACGTGCTAGTGGG
AATTAACTTATTGCGGGAAGGGCTGGATATTCCCGAAGTGTCCCTTGTTGCCATTTTAGATGCGGATAAAGAAGGCTTCT
TGCGTTCCGAACGCTCGCTAATCCAAACCATTGGGCGTGCGGCGAGAAATCTTAATGGTAAAGCCATTTTGTATGCAGAT
CACATCACCAAATCAATGGAAAAAGCCATCACAGAAACCAACCGCCGCCGCGAAAAACAAATGAAATATAATGCAGAGCA
GGGCATTGTACCGCAGGCATTAAACAAAAAAGTGGGCGAATTGCTCGACATTGGACAAGGTGCAACAAATAACAAAGCGA
AAAGCAAACAAAAACAAAAAACAGTGTCAGAACCGACCGCACTTTACCAACCGCTCAACGCCAAGGAATTTCAGCAACAA
GTTAAAAAACTGGAACAACAAATGTACAAACACGCCCAAGATCTGGAATTTGAAAAAGCCGCCGCAGTGCGGGATCAGCT
GCAGCAATTGAGGGAAAGATTTTTAGATTTGAAGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(557-598)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(639-672)

Type III restriction enzyme, res subunit (ResIII)

(20-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.824

98.968

0.572
  uvrB Streptococcus pneumoniae R6

57.675

98.968

0.571
  uvrB Streptococcus pneumoniae D39

57.675

98.968

0.571