Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | N16961_RS12455 | Genome accession | NZ_CP028827 |
| Coordinates | 2663164..2663808 (+) | Length | 214 a.a. |
| NCBI ID | WP_001188316.1 | Uniprot ID | Q9KUW3 |
| Organism | Vibrio cholerae strain N16961 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2658164..2668808
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N16961_RS12440 (N16961_VC02439) | - | 2658751..2660190 (-) | 1440 | WP_000743253.1 | PilN domain-containing protein | - |
| N16961_RS12445 (N16961_VC02440) | csrD | 2660203..2662215 (-) | 2013 | WP_001918202.1 | RNase E specificity factor CsrD | - |
| N16961_RS12450 (N16961_VC02441) | ssb | 2662339..2662872 (-) | 534 | WP_000168289.1 | single-stranded DNA-binding protein | Machinery gene |
| N16961_RS12455 (N16961_VC02442) | qstR | 2663164..2663808 (+) | 645 | WP_001188316.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| N16961_RS12460 (N16961_VC02443) | galU | 2663981..2664853 (+) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| N16961_RS12465 (N16961_VC02444) | uvrA | 2665009..2667831 (+) | 2823 | WP_000357696.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 24736.58 Da Isoelectric Point: 9.6461
>NTDB_id=287931 N16961_RS12455 WP_001188316.1 2663164..2663808(+) (qstR) [Vibrio cholerae strain N16961]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL
Nucleotide
Download Length: 645 bp
>NTDB_id=287931 N16961_RS12455 WP_001188316.1 2663164..2663808(+) (qstR) [Vibrio cholerae strain N16961]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
52.093 |
100 |
0.523 |
| qstR | Vibrio campbellii strain DS40M4 |
52.336 |
100 |
0.523 |