Detailed information NTG0287898

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N16961_RS01175
• Genome accession: NZ_CP028827
• Coordinates: 237347..238354 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain N16961
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232347..243354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N16961_RS01155 (N16961_VC00220)	metJ	232351..232668 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
N16961_RS01160 (N16961_VC00221)	-	232779..234056 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
N16961_RS01165 (N16961_VC00222)	rpmE	234364..234582 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
N16961_RS01170 (N16961_VC00223)	priA	234837..237041 (+)	2205	WP_001247858.1	primosomal protein N'	-
N16961_RS01175 (N16961_VC00224)	cytR	237347..238354 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
N16961_RS01180 (N16961_VC00225)	-	238526..239077 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
N16961_RS01185 (N16961_VC00226)	hslV	239214..239771 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
N16961_RS01190 (N16961_VC00227)	hslU	239837..241168 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
N16961_RS01195 (N16961_VC00228)	-	241272..242189 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N16961_RS01200 (N16961_VC00229)	rraA	242264..242779 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=287898 N16961_RS01175 WP_000224452.1 237347..238354(+) (cytR) [Vibrio cholerae strain N16961]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=287898 N16961_RS01175 WP_000224452.1 237347..238354(+) (cytR) [Vibrio cholerae strain N16961]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904