Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CDG57_RS14895 Genome accession   NZ_CP028800
Coordinates   3040190..3041620 (+) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCHAJ59     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035190..3046620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS14875 (CDG57_14865) - 3035900..3036514 (-) 615 WP_004957343.1 DUF6915 family protein -
  CDG57_RS14880 (CDG57_14870) pbpG 3036678..3037739 (-) 1062 WP_005403528.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CDG57_RS14885 (CDG57_14875) - 3037951..3038586 (+) 636 WP_004957336.1 response regulator -
  CDG57_RS14890 (CDG57_14880) pilS 3038602..3040167 (+) 1566 WP_004917019.1 sensor histidine kinase Regulator
  CDG57_RS14895 (CDG57_14885) pilR 3040190..3041620 (+) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  CDG57_RS14900 (CDG57_14890) - 3041659..3042834 (-) 1176 WP_004957321.1 S41 family peptidase -
  CDG57_RS14905 (CDG57_14895) gpmI 3042844..3044388 (-) 1545 WP_004958494.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CDG57_RS14910 (CDG57_14900) lptG 3044508..3045578 (-) 1071 WP_017397484.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=287820 CDG57_RS14895 WP_004917021.1 3040190..3041620(+) (pilR) [Acinetobacter junii strain WCHAJ59]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=287820 CDG57_RS14895 WP_004917021.1 3040190..3041620(+) (pilR) [Acinetobacter junii strain WCHAJ59]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTATGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTTCCAGATGGAAATGGTCTTGATCTTGTCAAACATGTGACTCAAAACTATCCAAACACACCAATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGCTGGGGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTTGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCCGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGCTGATTGGGCGTTCAGCACCTATTCAACAATTACGGATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGACTTATCTTATCTGCACACGGTGGCAGCCTTTTTTTAGATGAA
ATTGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGATCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCTCCACTTCGTGAACGTGGTCAAGATATCTTAATA
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAACATTATTGAACGAGCAATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATTTGCAAACTGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAACGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49

Multiple sequence alignment