Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CDG57_RS14890 Genome accession   NZ_CP028800
Coordinates   3038602..3040167 (+) Length   521 a.a.
NCBI ID   WP_004917019.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCHAJ59     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3033602..3045167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS14865 (CDG57_14855) thrC 3033891..3035030 (+) 1140 WP_002048893.1 threonine synthase -
  CDG57_RS14870 (CDG57_14860) - 3035097..3035876 (-) 780 WP_004917012.1 hypothetical protein -
  CDG57_RS14875 (CDG57_14865) - 3035900..3036514 (-) 615 WP_004957343.1 DUF6915 family protein -
  CDG57_RS14880 (CDG57_14870) pbpG 3036678..3037739 (-) 1062 WP_005403528.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CDG57_RS14885 (CDG57_14875) - 3037951..3038586 (+) 636 WP_004957336.1 response regulator -
  CDG57_RS14890 (CDG57_14880) pilS 3038602..3040167 (+) 1566 WP_004917019.1 sensor histidine kinase Regulator
  CDG57_RS14895 (CDG57_14885) pilR 3040190..3041620 (+) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  CDG57_RS14900 (CDG57_14890) - 3041659..3042834 (-) 1176 WP_004957321.1 S41 family peptidase -
  CDG57_RS14905 (CDG57_14895) gpmI 3042844..3044388 (-) 1545 WP_004958494.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59218.20 Da        Isoelectric Point: 6.3690

>NTDB_id=287819 CDG57_RS14890 WP_004917019.1 3038602..3040167(+) (pilS) [Acinetobacter junii strain WCHAJ59]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYLLTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNSQLSLIVTLFAVIMVVYQRFIGDFFNYNNLNHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQPLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIQQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIQLSLPENLTILFDEKQLRQVLINLICNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=287819 CDG57_RS14890 WP_004917019.1 3038602..3040167(+) (pilS) [Acinetobacter junii strain WCHAJ59]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACCGTCTATAAGCTTGGTATTTGGTATAGTGGATATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATTTATTAACGGCTGAGCAATTAGCCTCAGACTATGATTACCCTTTTTTATATTTCT
ATACACTGATTTGCTTTATTGCATTTAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCGGGGGGGCCAAACTTACAATTAAG
TTTGCTGTACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACTCTCAGCTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTGGTTTATCAACGTTTTATTGGCGATTTCTTTAACTACAACAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTGCATGCGATTGGACGTATTGCAGTACAACGTTTTAAAATTTTAGAGACGTTGACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGCAATCCTGCTGCCAATACTTTACTTGGAATTAATGTCCCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCTGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAGCCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTAAAATTGGCAGCTTTAGGACAACTTTCTGCAAGT
ATTGCACACGAAATCAGAAACCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCAGCAGCA
AGACATGCTATCTCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTTTGGGGATGGCACGCA
ATAAACCTACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCAACTCAGTTTGCCTGAAAATTTAACGATCCTGTTTGATGAAAAACAATTAAGACAAGTATTAATCAATCT
TATTTGTAATGCTATAAGACACAATGCACCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGTCGCACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.504

99.04

0.649

Multiple sequence alignment