Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CDG57_RS09470 Genome accession   NZ_CP028800
Coordinates   1930584..1931291 (+) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain WCHAJ59     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925584..1936291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS09450 (CDG57_09430) - 1925734..1926156 (-) 423 WP_004915093.1 hypothetical protein -
  CDG57_RS09455 (CDG57_09435) clpB 1926321..1928900 (-) 2580 WP_004915091.1 ATP-dependent chaperone ClpB -
  CDG57_RS09460 (CDG57_09440) - 1929162..1929962 (+) 801 Protein_1789 peptidoglycan DD-metalloendopeptidase family protein -
  CDG57_RS09465 (CDG57_09445) - 1930008..1930436 (-) 429 WP_004953612.1 OsmC family protein -
  CDG57_RS09470 (CDG57_09450) crp 1930584..1931291 (+) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  CDG57_RS09475 (CDG57_09455) - 1931497..1932276 (+) 780 WP_004915079.1 M48 family metallopeptidase -
  CDG57_RS09480 (CDG57_09460) - 1932329..1934062 (-) 1734 WP_042892513.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  CDG57_RS09485 (CDG57_09465) - 1934063..1935637 (-) 1575 WP_087540704.1 urea amidolyase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=287803 CDG57_RS09470 WP_004915082.1 1930584..1931291(+) (crp) [Acinetobacter junii strain WCHAJ59]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=287803 CDG57_RS09470 WP_004915082.1 1930584..1931291(+) (crp) [Acinetobacter junii strain WCHAJ59]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATATTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCTGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCAGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATAGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAGGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACATCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404

Multiple sequence alignment