Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDG57_RS06240 Genome accession   NZ_CP028800
Coordinates   1283555..1284601 (-) Length   348 a.a.
NCBI ID   WP_004912011.1    Uniprot ID   S7YCL8
Organism   Acinetobacter junii strain WCHAJ59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1278555..1289601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS06210 (CDG57_06220) - 1278762..1279217 (+) 456 WP_004912022.1 phasin family protein -
  CDG57_RS06215 (CDG57_06225) - 1279385..1279657 (+) 273 WP_004878739.1 HU family DNA-binding protein -
  CDG57_RS06220 (CDG57_06230) - 1279797..1281668 (+) 1872 WP_087540320.1 SurA N-terminal domain-containing protein -
  CDG57_RS16760 - 1281730..1282149 (-) 420 Protein_1152 tetratricopeptide repeat protein -
  CDG57_RS16765 - 1282269..1282593 (-) 325 Protein_1153 YbgF trimerization domain-containing protein -
  CDG57_RS06235 (CDG57_06245) - 1283026..1283508 (-) 483 WP_087540318.1 regulatory protein RecX -
  CDG57_RS06240 (CDG57_06250) recA 1283555..1284601 (-) 1047 WP_004912011.1 recombinase RecA Machinery gene
  CDG57_RS06245 (CDG57_06255) - 1284762..1285190 (-) 429 WP_004912009.1 RNA-binding S4 domain-containing protein -
  CDG57_RS06250 (CDG57_06260) - 1285174..1285878 (-) 705 WP_005402406.1 HAD-IA family hydrolase -
  CDG57_RS06255 (CDG57_06265) - 1285890..1286747 (+) 858 WP_005402407.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CDG57_RS06260 (CDG57_06270) - 1286801..1287532 (+) 732 WP_004912000.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37779.18 Da        Isoelectric Point: 5.0312

>NTDB_id=287800 CDG57_RS06240 WP_004912011.1 1283555..1284601(-) (recA) [Acinetobacter junii strain WCHAJ59]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENSKIAAEIEK
VVREQLLTKNNPEAAPTEDVEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=287800 CDG57_RS06240 WP_004912011.1 1283555..1284601(-) (recA) [Acinetobacter junii strain WCHAJ59]
ATGGATGATAATAAAAGTAAAGCGTTACAAGCTGCGTTAAGCCAGATTGAAAAACAATTTGGCAAAAACACTGTGATGCG
CTTAGGTGACAATACTGTACAAGCAGTTGAAGCTGTATCTACAGGGTCATTAACACTAGATATCGCTTTAGGTATTGGTG
GATTACCGAAAGGTCGTATTATTGAGATTTATGGTCCTGAATCATCTGGTAAAACAACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAAAATGGTGGTACTTGTGCATTCATCGATGCTGAACATGCGCTTGACCCACAATATGCACGCAAATTAGG
CGTTGATATTGACAACCTACTAGTCTCTCAACCTGACAATGGTGAACAAGCGCTTGAAATCGCAGATATGCTCGTTCGTT
CAGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCAGCATTAACACCAAAAGCTGAAATTGAAGGCGAAATGGGTGAC
TCTCATATGGGCTTACAAGCTCGTTTGATGAGCCAAGCATTGCGTAAAATCACTGGTAACGCAAAACGCTCTAACTGTAT
GGTGATCTTCATCAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGTCCAGAAACAACCACAGGTGGTAATGCAC
TTAAATTCTATGCGTCAGTGCGCTTAGATATCCGTCGTATTGGACAAGTTAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACTAAAGTCAAAGTTGTAAAAAACAAAATGGCTCCTCCTTTCCGCGAAGCAGTATTCCAAATCATGTACGGTAAAGGAAC
TAATCAACTAGGTGAATTAGTTGACCTCGCCGTACAACAAGATATTGTTCAAAAAGCGGGTGCATGGTACTCATACCAAG
GCAACAAAATCGGACAAGGTAAAAACAACGTAATTCGTTATTTTGAAGAGAATTCGAAAATCGCTGCTGAAATTGAGAAG
GTTGTTCGCGAGCAATTACTCACCAAAAACAATCCTGAAGCAGCACCTACAGAAGATGTAGAAGAACCAGATTTTTTAGA
AAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7YCL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

93.931

99.425

0.934
  recA Acinetobacter baylyi ADP1

92.837

100

0.931
  recA Pseudomonas stutzeri DSM 10701

73.199

99.713

0.73
  recA Vibrio cholerae strain A1552

73.273

95.69

0.701
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.273

95.69

0.701
  recA Glaesserella parasuis strain SC1401

68.3

99.713

0.681
  recA Ralstonia pseudosolanacearum GMI1000

67.236

100

0.678
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.519

93.103

0.638
  recA Helicobacter pylori strain NCTC11637

62.682

98.563

0.618
  recA Helicobacter pylori 26695

62.391

98.563

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.966

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

95.977

0.606
  recA Streptococcus mitis NCTC 12261

59.429

100

0.598
  recA Streptococcus mitis SK321

60.947

97.126

0.592
  recA Streptococcus mutans UA159

58.908

100

0.589
  recA Streptococcus pneumoniae R6

62.883

93.678

0.589
  recA Streptococcus pneumoniae Rx1

62.883

93.678

0.589
  recA Streptococcus pneumoniae D39

62.883

93.678

0.589
  recA Streptococcus pneumoniae TIGR4

62.883

93.678

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

62.195

94.253

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.654

93.103

0.583
  recA Streptococcus pyogenes NZ131

62.154

93.391

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

56.812

99.138

0.563
  recA Lactococcus lactis subsp. cremoris KW2

59.133

92.816

0.549

Multiple sequence alignment