Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOY78_RS01625 Genome accession   NZ_CP028750
Coordinates   353571..354107 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain A25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 347955..356578 353571..354107 within 0


Gene organization within MGE regions


Location: 347955..356578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY78_RS01600 (AOY78_01675) - 348096..348458 (-) 363 Protein_293 hypothetical protein -
  AOY78_RS01605 (AOY78_01680) aphA 348859..349572 (+) 714 WP_001226928.1 acid phosphatase AphA -
  AOY78_RS01610 (AOY78_01685) yjbQ 349683..350099 (+) 417 WP_096841146.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AOY78_RS01615 (AOY78_01690) yjbR 350103..350459 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AOY78_RS01620 (AOY78_01695) uvrA 350494..353316 (-) 2823 WP_096891060.1 excinuclease ABC subunit UvrA -
  AOY78_RS01625 (AOY78_01705) ssb 353571..354107 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AOY78_RS01630 (AOY78_01710) - 354320..355606 (-) 1287 WP_001591357.1 anaerobic C4-dicarboxylate transporter family protein -
  AOY78_RS01635 (AOY78_01715) - 355697..356578 (-) 882 WP_000771876.1 fumarylacetoacetate hydrolase family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=287223 AOY78_RS01625 WP_000168305.1 353571..354107(+) (ssb) [Escherichia coli strain A25]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=287223 AOY78_RS01625 WP_000168305.1 353571..354107(+) (ssb) [Escherichia coli strain A25]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCC
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGATTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment