Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EGM96_RS07200 Genome accession   NZ_CP033876
Coordinates   1522113..1524134 (+) Length   673 a.a.
NCBI ID   WP_031961076.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WU_164     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1517113..1529134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM96_RS07180 (EGM96_07205) - 1517880..1519109 (-) 1230 WP_000383199.1 pyridoxal phosphate-dependent aminotransferase -
  EGM96_RS07185 (EGM96_07210) - 1519317..1519496 (+) 180 WP_000139632.1 hypothetical protein -
  EGM96_RS07190 (EGM96_07215) - 1519531..1520967 (-) 1437 WP_031961079.1 diguanylate cyclase domain-containing protein -
  EGM96_RS07195 (EGM96_07220) - 1521142..1521933 (-) 792 WP_031961077.1 hypothetical protein -
  EGM96_RS07200 (EGM96_07225) uvrB 1522113..1524134 (+) 2022 WP_031961076.1 excinuclease ABC subunit UvrB Machinery gene
  EGM96_RS07205 (EGM96_07230) - 1524228..1524815 (+) 588 WP_031961075.1 lipocalin family protein -
  EGM96_RS07210 (EGM96_07235) rarD 1524924..1525871 (+) 948 WP_014466252.1 EamA family transporter RarD -
  EGM96_RS07215 (EGM96_07240) - 1526088..1527545 (+) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  EGM96_RS07220 (EGM96_07245) - 1527695..1528429 (+) 735 WP_001183838.1 hypothetical protein -
  EGM96_RS07225 (EGM96_07250) - 1528441..1529115 (+) 675 WP_031961074.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77292.10 Da        Isoelectric Point: 5.4214

>NTDB_id=285661 EGM96_RS07200 WP_031961076.1 1522113..1524134(+) (uvrB) [Acinetobacter baumannii strain WU_164]
MNENQPFDLVTHYQPAGDQPQAIEKLVKGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=285661 EGM96_RS07200 WP_031961076.1 1522113..1524134(+) (uvrB) [Acinetobacter baumannii strain WU_164]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAAGGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGCCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCCTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTATGACTACTATCAACCCGAGGCCTATGTTCCGTCATC
AGATACATTTATTGAAAAAGACGCAGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGATCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGATGGTTTGATCCGCTTACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGTGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACGCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGGTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGTGAAGCACCACCGACTTTATTTGACTATGTACCTGAAGATGCCTTACTTATTATCGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGTCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACTACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCTGTACTTACCCAAGTCGATGATGTTTTGTCTGAGATTAACATTCGTAAAAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGTGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCTTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae R6

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae D39

57.997

99.406

0.577

Multiple sequence alignment