Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSPA7_RS24730 Genome accession   NC_009656
Coordinates   5332176..5333768 (+) Length   530 a.a.
NCBI ID   WP_003150028.1    Uniprot ID   A6VBT3
Organism   Pseudomonas paraeruginosa PA7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5327176..5338768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSPA7_RS24710 (PSPA7_5182) pgeF 5328929..5329657 (-) 729 WP_012077304.1 peptidoglycan editing factor PgeF -
  PSPA7_RS24715 (PSPA7_5183) rluD 5329654..5330616 (-) 963 WP_003150035.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSPA7_RS24720 (PSPA7_5184) - 5330762..5331787 (+) 1026 WP_012077305.1 outer membrane protein assembly factor BamD -
  PSPA7_RS24725 (PSPA7_5185) - 5331941..5332186 (+) 246 WP_003150030.1 PP0621 family protein -
  PSPA7_RS24730 (PSPA7_5186) pilS 5332176..5333768 (+) 1593 WP_003150028.1 two-component system sensor histidine kinase PilS Regulator
  PSPA7_RS24735 (PSPA7_5187) pilR 5333784..5335121 (+) 1338 WP_012077306.1 two-component system response regulator PilR Regulator
  PSPA7_RS24740 (PSPA7_5188) thiO 5335167..5336261 (-) 1095 WP_041025522.1 glycine oxidase ThiO -
  PSPA7_RS24745 (PSPA7_5189) - 5336396..5336905 (+) 510 WP_003150026.1 GspH/FimT family protein -
  PSPA7_RS24750 (PSPA7_5190) - 5337011..5337517 (+) 507 WP_012077308.1 Tfp pilus assembly protein FimT/FimU -
  PSPA7_RS24755 (PSPA7_5191) pilV 5337508..5338065 (+) 558 WP_012077309.1 type IV pilus modification protein PilV Machinery gene

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59043.35 Da        Isoelectric Point: 6.9940

>NTDB_id=28555 PSPA7_RS24730 WP_003150028.1 5332176..5333768(+) (pilS) [Pseudomonas paraeruginosa PA7]
MRAERLRLSEEQGQRILRLYHLYRLTIGLVLVLLISSELEEQVLKLVHPELFHVGSWCYLVFNILVALFLPPSRQLLPIF
ILALTDVLMLCGLFYAGGGMPSGIGSLLVVAVAIANILLRGRIGLVIAAVASLGLLYLTFFLSLSSPDSANHYVQAGGLG
TLCFAAALVIQALVRRQEQTETLAEERAETVANLEELNALILQRMRTGILVVDSRLSILLANQAALGLLRQDQVRGVGLD
RCSPMLVHCMKQWRLNPSLRPPTLKVIPEGPAVQPSFISLNREHDRHVLIFLEDISQIAQQAQQMKLAGLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLKDWLQRFVDEYPGKLRND
SELHLQLGAGDIHTRMDPHQLNQVLSNLVQNGLRYSAQAHGRGQVWLSLARDADSDLPVLEIADDGPGVPTDKLNNLFEP
FFTTESKGTGLGLYLSRELCESNQARIDYRNREEGGGCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=28555 PSPA7_RS24730 WP_003150028.1 5332176..5333768(+) (pilS) [Pseudomonas paraeruginosa PA7]
GTGCGCGCTGAGCGGCTGCGGCTGAGCGAGGAGCAAGGGCAGCGCATCCTCCGCCTGTATCACCTGTATCGCCTGACCAT
CGGCCTGGTACTGGTCCTGCTGATCTCCAGCGAGCTGGAAGAACAGGTCCTGAAACTGGTCCATCCCGAATTGTTCCATG
TCGGCAGCTGGTGCTACCTGGTCTTCAACATCCTGGTCGCGCTGTTCCTGCCGCCGTCACGGCAGTTGCTGCCGATCTTC
ATCCTCGCCCTCACCGACGTGCTGATGCTCTGCGGCCTGTTCTACGCGGGCGGCGGCATGCCCAGCGGCATCGGCAGCCT
GCTGGTGGTGGCGGTGGCGATCGCCAACATCCTCCTGCGCGGGCGCATCGGCCTGGTAATCGCCGCGGTGGCCAGCCTGG
GCCTGCTGTACCTGACCTTCTTCCTCAGCCTGAGCAGCCCGGACTCCGCCAACCACTACGTCCAGGCCGGCGGCCTAGGC
ACCCTGTGCTTCGCCGCCGCGCTGGTGATCCAGGCCCTGGTGCGGCGCCAGGAACAGACGGAAACGCTGGCCGAGGAACG
CGCCGAGACGGTCGCCAACCTCGAAGAACTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGGTCGATA
GCCGCCTGAGCATCCTCCTCGCCAACCAGGCCGCCCTCGGCCTGCTCAGGCAGGACCAGGTGCGGGGCGTCGGCCTGGAC
CGTTGCAGCCCGATGCTGGTGCACTGCATGAAGCAGTGGCGCCTCAACCCCAGCCTCCGCCCGCCGACCCTCAAGGTGAT
TCCGGAGGGCCCCGCCGTGCAACCCAGCTTCATCAGCCTCAACCGTGAACACGACCGGCATGTGCTGATCTTCCTCGAAG
ACATCTCGCAGATCGCCCAGCAGGCGCAGCAGATGAAGCTTGCCGGCCTCGGCCGGCTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGCCATGCCGCGCAACTGCTGCAGGAATCCGAGGAGCTCGACGGCGCCGACCGCCG
CCTGACACAGATCATCCAGGACCAGTCGCGACGGATGAACCTGGTCATCGAGAACGTCCTGCAGCTCTCCCGCCGCCGCC
AGGCCGAACCACAGCAACTCGACCTGAAGGACTGGCTGCAACGCTTCGTCGACGAATATCCCGGCAAGCTGCGCAACGAC
AGCGAACTGCACCTGCAGCTCGGCGCCGGCGACATCCACACGCGCATGGACCCGCACCAGTTGAATCAGGTACTGAGCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGCCCAGGCGCACGGGCGCGGCCAGGTCTGGCTGAGTCTCGCGCGCGATGCGG
ACAGCGACCTGCCGGTGCTGGAAATCGCCGACGACGGCCCCGGCGTGCCGACGGACAAGCTGAACAACCTGTTCGAACCC
TTCTTTACTACAGAAAGCAAAGGTACCGGCCTGGGCCTCTATCTCTCCCGCGAATTGTGCGAGAGCAACCAGGCGCGCAT
CGACTACCGCAATCGCGAGGAGGGTGGAGGCTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACTCAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6VBT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

94.528

100

0.945

Multiple sequence alignment