Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CDG55_RS13915 Genome accession   NZ_CP028561
Coordinates   2599510..2600934 (+) Length   474 a.a.
NCBI ID   WP_087536539.1    Uniprot ID   A0A2R4TMW9
Organism   Acinetobacter sp. WCHA45     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2594510..2605934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS13895 (CDG55_13885) - 2595037..2595816 (-) 780 WP_087536541.1 hypothetical protein -
  CDG55_RS13900 (CDG55_13890) pbpG 2595989..2597056 (-) 1068 WP_143225221.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CDG55_RS13905 (CDG55_13895) - 2597267..2597902 (+) 636 WP_005163158.1 response regulator -
  CDG55_RS13910 (CDG55_13900) pilS 2597922..2599487 (+) 1566 WP_087536540.1 sensor histidine kinase Regulator
  CDG55_RS13915 (CDG55_13905) pilR 2599510..2600934 (+) 1425 WP_087536539.1 sigma-54-dependent transcriptional regulator Regulator
  CDG55_RS13920 (CDG55_13910) - 2600975..2602150 (-) 1176 WP_087536538.1 S41 family peptidase -
  CDG55_RS13925 (CDG55_13915) gpmI 2602160..2603704 (-) 1545 WP_087536537.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CDG55_RS13930 (CDG55_13920) lptG 2603825..2604895 (-) 1071 WP_087536536.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53095.96 Da        Isoelectric Point: 6.1058

>NTDB_id=285529 CDG55_RS13915 WP_087536539.1 2599510..2600934(+) (pilR) [Acinetobacter sp. WCHA45]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAESALENKLLIGRSTPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGASQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWEVSVKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPIATPTVSFSTQ
DENDHAVSTSPMGSKKLPSEGLELYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=285529 CDG55_RS13915 WP_087536539.1 2599510..2600934(+) (pilR) [Acinetobacter sp. WCHA45]
ATGGCAACTAAACAACCACTCGTCTTGCTAGTAGACGATGAAGAAGACTTATGTCTCCTCATGCAAATGACGCTTGCACG
AATGGGGATTAAAACCCATCTTGCCTATCGTGTAGAGCAAGCAAAAAAATTCTTTACCGAGTTTCAGTACGATGCCTGTT
TAACAGATTTGAATCTCCCAGATGGCAATGGTCTGGACTTGGTTAAACATGTCACACAAAACTATCCCAACACACCGATT
GCAGTATTAACAGCATATGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
GGTCAATCAAACTCATTTAGATCAATTGATTCAAAAAGCATTGAATCGACCACAGCCTGAACAAGAAGCTGCTGAAAGCG
CATTAGAAAATAAACTTCTCATTGGTCGATCTACGCCCATTCAGCAATTACGGATTGCTTTAAAGAAAATTGCTCGATCT
CAAGCCCCTGTCTTTATTACCGGTGAATCAGGGACAGGAAAAGAAGTTGTTGCCAATTTAGTTCATCGTCTGAGTAACCG
TAGTGAAGGACCTTTTATTGCGATCAACTGTGGTGCTATTCCAACAGAGTTAATGGAAAGTGAACTATTTGGTCATAAAA
AGGGCAGCTTTACAGGCGCATCCCAAGACAAACAAGGTTTAATTCTTTCCGCACATGGGGGTAGTTTATTCTTAGATGAG
ATCGCTGAATTACCCTTAAGTATGCAGGTAAAACTGCTTCGTGCTGTACAAGAAAAGAAAATTCGCCCTGTCGGCTCAGA
TCAAGAAATTGATGTTGATTTCCGGGTCATCAGTGCGAGTCATCAAGATCTTGAATTACTAGTGCAACAAGGTCGTTTCA
GACAAGATTTATTCTTCCGCATTCACGTCATGGATATTGTATTACCTCCTTTACGTGAACGTGGGCAAGATATCTTATTG
TTAGCAAATCACTTTATTCAGAAAATCAGCCAAGAATGGGAAGTCTCTGTCAAAACCCTTTCTTCTCGTGCTGAACAATT
CTTATTGCAACAATATTTTCCAGGTAATGTACGCGAGCTTCGAAATATTATTGAACGTGCAATTACGCTCAGTGATGATG
AAACCATTGATCTAGCTCATCTTCAAACAGCTCCTCTACGTAGCCCTATTGCAACGCCAACAGTCTCATTTTCAACACAG
GATGAAAATGATCATGCGGTAAGCACTAGCCCTATGGGTTCTAAAAAGCTACCATCTGAAGGACTGGAGCTCTATCTAGA
AAATATTGAAAAAGAGATTCTTCTCAATGCACTGAATTTAACCCATTGGAACCGAACGTTAGCAGCAAAGAAATTAGGAA
TGACTTTCCGTTCTTTACGTTATCGTTTGAAAAAATTTGGTTTAGATACAGAAGATGATGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4TMW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.755

100

0.838
  pilR Pseudomonas aeruginosa PAK

50.216

97.468

0.489

Multiple sequence alignment