Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CDG55_RS13910 Genome accession   NZ_CP028561
Coordinates   2597922..2599487 (+) Length   521 a.a.
NCBI ID   WP_087536540.1    Uniprot ID   A0A2R4TMS1
Organism   Acinetobacter sp. WCHA45     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2592922..2604487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS13890 (CDG55_13880) thrC 2593831..2594970 (+) 1140 WP_004957346.1 threonine synthase -
  CDG55_RS13895 (CDG55_13885) - 2595037..2595816 (-) 780 WP_087536541.1 hypothetical protein -
  CDG55_RS13900 (CDG55_13890) pbpG 2595989..2597056 (-) 1068 WP_143225221.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CDG55_RS13905 (CDG55_13895) - 2597267..2597902 (+) 636 WP_005163158.1 response regulator -
  CDG55_RS13910 (CDG55_13900) pilS 2597922..2599487 (+) 1566 WP_087536540.1 sensor histidine kinase Regulator
  CDG55_RS13915 (CDG55_13905) pilR 2599510..2600934 (+) 1425 WP_087536539.1 sigma-54-dependent transcriptional regulator Regulator
  CDG55_RS13920 (CDG55_13910) - 2600975..2602150 (-) 1176 WP_087536538.1 S41 family peptidase -
  CDG55_RS13925 (CDG55_13915) gpmI 2602160..2603704 (-) 1545 WP_087536537.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59438.37 Da        Isoelectric Point: 6.8119

>NTDB_id=285528 CDG55_RS13910 WP_087536540.1 2597922..2599487(+) (pilS) [Acinetobacter sp. WCHA45]
MLGKIASSVSQTVYRLGIWYSGYRLIISISLILIYLLTAEQLATNYDYPFLYFYTLICYISFNIFQLFLLKIVPLQISKQ
LIFIFIIDVICLSVITFSAGGPNLQLSLLYVIIIFSSAILLNAHLSLIVTLFAVIMVVYQRFLGNFFDYNNLNHLGNSAL
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGVHFSMSTE
KTPLIKWQPDLFELIQLSDLKDGEEFSFESQQSPYTVNIKVKHLIVPEQALILLILKDTQKLNQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFKESDSHQQEMLCRMISKQARRIDNIVQDTLGMARNKPTEPQVIQLADFFESLLNEDLVDAK
HMIKLNLAERIHILFDEKQLRQVLINLIRNALRHNAPDAQFIEVNVDLKDGRTCIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLTYVERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=285528 CDG55_RS13910 WP_087536540.1 2597922..2599487(+) (pilS) [Acinetobacter sp. WCHA45]
ATGTTGGGAAAAATTGCGTCCTCAGTGTCCCAAACCGTTTATCGGCTCGGAATTTGGTATAGTGGATATCGACTGATTAT
TTCAATCAGTCTAATCCTTATTTACTTACTTACCGCAGAGCAGCTTGCTACCAATTATGATTATCCATTTTTATATTTTT
ACACTCTGATTTGTTATATCAGCTTTAATATTTTTCAGCTTTTTTTACTAAAAATAGTTCCATTACAAATCAGCAAACAG
CTCATTTTTATTTTTATTATAGACGTGATCTGTTTAAGTGTGATTACCTTTTCGGCAGGCGGTCCGAACTTACAATTAAG
CTTATTGTACGTCATCATTATTTTCTCCTCAGCAATTCTCCTAAATGCTCATCTTTCACTGATTGTGACGCTTTTTGCCG
TTATTATGGTGGTTTATCAACGTTTTCTGGGCAACTTTTTTGACTACAATAATTTAAATCATCTCGGCAATAGCGCTCTC
CTTGCCTTTCTATTTTTTGTGGTGCATGCGATTGGCCGTATTGCGGTGCAACGATTTAAAATTCTGGAAACCTTAACTTT
CCACCAATCTATCGAGATCCATCAACTCCAGAATATTAACCGTTATATTCTCGAACAAATTGAGGATGGCTATCTGGTTC
TGGATGAAAGCAACCATATTGTACTGAGCAATCCCGCCGCCAATACCCTACTCGGTGTTCATTTTTCGATGTCCACAGAG
AAAACGCCTTTAATCAAATGGCAACCAGATCTATTTGAATTGATTCAGCTCAGCGACTTAAAAGATGGTGAAGAATTTAG
TTTTGAATCGCAGCAAAGTCCATATACCGTTAATATCAAAGTTAAACATCTGATTGTGCCTGAGCAAGCCCTTATTTTAT
TGATTTTAAAAGATACACAGAAACTAAACCAACAAGTCCAGCAATTGAAACTGGCGGCTTTAGGACAGCTCTCAGCCAGT
ATTGCCCACGAAATTCGCAACCCTCTGGCTGCAATTGTACAGGCCAATGAATTATTTAAAGAAAGTGACAGTCATCAACA
AGAAATGCTCTGTCGTATGATTAGCAAACAAGCTAGACGTATTGATAATATTGTGCAAGATACATTAGGCATGGCGCGCA
ACAAACCAACTGAGCCACAAGTCATTCAATTGGCTGATTTTTTTGAGAGCCTATTGAATGAAGATCTAGTCGATGCGAAA
CATATGATTAAACTCAATCTTGCAGAACGCATTCATATTCTTTTTGATGAGAAACAATTACGCCAAGTTCTAATTAACCT
GATTCGAAATGCTCTGCGGCACAATGCACCTGATGCTCAATTTATTGAAGTGAATGTAGACTTAAAAGATGGCAGAACAT
GTATTGATGTCATTGATTTTGGTACGGGTGTCGCAAAACGAGATATTTCTCAGCTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACCTGTCTCACAGCTTTTGTGAGGCAAATCATGCAAAGCTCACCTATGTAGAGCG
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4TMS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.504

99.04

0.649

Multiple sequence alignment