Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CDG55_RS07450 Genome accession   NZ_CP028561
Coordinates   1262979..1263686 (-) Length   235 a.a.
NCBI ID   WP_087537354.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHA45     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1257979..1268686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS07435 (CDG55_07435) - 1258612..1260195 (+) 1584 WP_087537356.1 urea amidolyase family protein -
  CDG55_RS07440 (CDG55_07440) - 1260188..1261915 (+) 1728 WP_087537364.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  CDG55_RS07445 (CDG55_07445) - 1261989..1262765 (-) 777 WP_087537355.1 M48 family metallopeptidase -
  CDG55_RS07450 (CDG55_07450) crp 1262979..1263686 (-) 708 WP_087537354.1 cAMP-activated global transcriptional regulator CRP Regulator
  CDG55_RS07455 (CDG55_07455) - 1263834..1264256 (+) 423 WP_087537353.1 OsmC family protein -
  CDG55_RS07460 (CDG55_07460) - 1264325..1264708 (-) 384 Protein_1183 M23 family metallopeptidase -
  CDG55_RS07465 (CDG55_07465) clpB 1265074..1267653 (+) 2580 WP_087537352.1 ATP-dependent chaperone ClpB -
  CDG55_RS07470 (CDG55_07470) - 1267821..1268240 (+) 420 WP_087537351.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26566.10 Da        Isoelectric Point: 4.7361

>NTDB_id=285514 CDG55_RS07450 WP_087537354.1 1262979..1263686(-) (crp) [Acinetobacter sp. WCHA45]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFENNPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSTQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLDDNAFSEDEFDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=285514 CDG55_RS07450 WP_087537354.1 1262979..1263686(-) (crp) [Acinetobacter sp. WCHA45]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGTCAATTACCTGAGTCAGTTAAAGCATTGCTAAA
ACGTGCTCATATTAATAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATCATATTACGTGAAGATGATGAGCGTGAGATTGTTGTTGCATATCTCAATCCAGGTGATTTC
TTTGGTGAAATGGGGCTGTTTGAAAATAACCCTCAACGTACCGCAGAAGTACGTACACGAGATGTTTGCGAAATTGCAGA
AATCTCATATGAAAATTTCCACGAACTCAGCAAACAATACCCTGACCTGAGCTATGCTGTATTTGCTCAGCTTGTTCGCC
GTCTGAAGAATACAACGCGTAAAGTCACTGACTTAGCATTTATCGATGTATCTGGTCGTATTGCTCGTTGTTTAATTGAC
TTATCTACACAGCCTGAGGCAATGATTCTACCGAATGGTCGTCAGATTCGTATTACACGTCAAGAAATTGGTCGTATTGT
GGGTTGTTCACGTGAAATGGTTGGTCGTGTTTTAAAAACACTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACTTCTTTAGATGATAACGCATTTTCTGAAGATGAATTTGATGATGAGGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.766

100

0.928
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404

Multiple sequence alignment