Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDG55_RS07080 Genome accession   NZ_CP028561
Coordinates   1194150..1195196 (-) Length   348 a.a.
NCBI ID   WP_004661473.1    Uniprot ID   N9LTX4
Organism   Acinetobacter sp. WCHA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189150..1200196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS07050 (CDG55_07050) - 1189369..1189824 (+) 456 WP_005160802.1 phasin family protein -
  CDG55_RS07055 (CDG55_07055) - 1189990..1190262 (+) 273 WP_004661469.1 HU family DNA-binding protein -
  CDG55_RS07060 (CDG55_07060) - 1190391..1192262 (+) 1872 WP_005160800.1 SurA N-terminal domain-containing protein -
  CDG55_RS07065 (CDG55_07065) - 1192331..1193194 (-) 864 WP_005160798.1 YbgF trimerization domain-containing protein -
  CDG55_RS07075 (CDG55_07075) - 1193621..1194103 (-) 483 WP_005160797.1 regulatory protein RecX -
  CDG55_RS07080 (CDG55_07080) recA 1194150..1195196 (-) 1047 WP_004661473.1 recombinase RecA Machinery gene
  CDG55_RS07085 (CDG55_07085) - 1195355..1195783 (-) 429 WP_005160794.1 RNA-binding S4 domain-containing protein -
  CDG55_RS07090 (CDG55_07090) - 1195767..1196471 (-) 705 WP_087536860.1 HAD-IA family hydrolase -
  CDG55_RS07095 (CDG55_07095) - 1196483..1197340 (+) 858 WP_087536861.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  CDG55_RS07100 (CDG55_07100) - 1197397..1198128 (+) 732 WP_087536862.1 histidine phosphatase family protein -
  CDG55_RS07105 (CDG55_07105) rpsT 1198247..1198513 (-) 267 WP_004639414.1 30S ribosomal protein S20 -
  CDG55_RS07110 (CDG55_07110) - 1198726..1199391 (+) 666 WP_087536863.1 NAD(P)H-binding protein -
  CDG55_RS07115 (CDG55_07115) rraA 1199404..1199916 (+) 513 WP_004962721.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37940.28 Da        Isoelectric Point: 5.0470

>NTDB_id=285513 CDG55_RS07080 WP_004661473.1 1194150..1195196(-) (recA) [Acinetobacter sp. WCHA45]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPAMAQEIEK
VIREQLLTKNNKEAAQTEDEEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=285513 CDG55_RS07080 WP_004661473.1 1194150..1195196(-) (recA) [Acinetobacter sp. WCHA45]
ATGGATGATAATAAAAGCAAGGCGTTACAAGCAGCCTTAAGCCAAATTGAAAAGCAGTTTGGTAAAAATACCGTGATGCG
CTTAGGTGATAATACTGTACAAGCTGTTGAAGCGGTTTCTACAGGTTCTTTAACTCTCGATATCGCATTAGGGATTGGCG
GATTACCTAAAGGTCGTATTATCGAAATTTATGGTCCTGAATCTTCAGGTAAAACCACCATGACATTACAAGCGATTGCT
CAATGTCAAAAAAATGGCGGTACCTGTGCCTTTATCGATGCAGAACATGCATTAGATCCAGAATATGCACGTAAGCTTGG
CGTAGATATTGATAATCTATTGGTTTCACAACCTGACCACGGTGAGCAAGCGCTCGAAATCGCCGATATGCTAGTGCGTT
CGGGTGCAATCGATTTAATCGTTGTCGACTCTGTAGCAGCATTAACCCCTAAAGCTGAAATTGAAGGCGAAATGGGCGAC
TCGCATATGGGCTTACAAGCACGCTTAATGAGTCAAGCTCTGCGTAAAATTACAGGTAATGCAAAACGCTCGAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTAATGTTTGGTAGTCCAGAAACCACTACAGGTGGTAATGCAC
TTAAATTCTACGCTTCTGTACGCTTAGACATCCGTCGTATTGGTCAAGTGAAAGAAGGTGACGAGATCACAGGTAACGAA
ACGCGTGTTAAAGTTGTGAAAAACAAAATGGCACCTCCGTTCAAAGAAGCTGTGTTCCAAATCATGTATGGCAAAGGTAC
CAATCAGTTAGGCGAATTGGTTGATCTTGCTGTTCAACAAGACATCGTACAAAAAGCGGGTGCTTGGTATTCTTATCAAG
GCAATAAAATTGGTCAAGGTAAAAATAACGTGATTCGACATTTTGAGGAAAATCCAGCAATGGCTCAAGAAATCGAAAAG
GTCATTCGTGAACAACTTCTTACTAAAAATAACAAAGAAGCAGCTCAAACTGAAGATGAAGAAGAACCAGATTTTTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LTX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

93.064

99.425

0.925
  recA Acinetobacter baylyi ADP1

92.264

100

0.925
  recA Pseudomonas stutzeri DSM 10701

72.334

99.713

0.721
  recA Vibrio cholerae strain A1552

73.414

95.115

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.414

95.115

0.698
  recA Glaesserella parasuis strain SC1401

67.435

99.713

0.672
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae strain FA1090

65.805

100

0.658
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.368

0.638
  recA Helicobacter pylori strain NCTC11637

63.343

97.989

0.621
  recA Helicobacter pylori 26695

63.05

97.989

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

98.563

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.977

0.612
  recA Streptococcus mutans UA159

59.195

100

0.592
  recA Streptococcus pneumoniae R6

59.593

98.851

0.589
  recA Streptococcus pneumoniae TIGR4

59.593

98.851

0.589
  recA Streptococcus pneumoniae Rx1

59.593

98.851

0.589
  recA Streptococcus pneumoniae D39

59.593

98.851

0.589
  recA Streptococcus mitis SK321

59.824

97.989

0.586
  recA Streptococcus mitis NCTC 12261

59.531

97.989

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

61.89

94.253

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

90.517

0.583
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.241

0.549

Multiple sequence alignment