Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ASUC_RS09710 Genome accession   NC_009655
Coordinates   2062087..2062428 (-) Length   113 a.a.
NCBI ID   WP_012073601.1    Uniprot ID   A6VQH7
Organism   Actinobacillus succinogenes 130Z     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057087..2067428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS09690 (Asuc_1869) serA 2057982..2059220 (-) 1239 WP_012073597.1 phosphoglycerate dehydrogenase -
  ASUC_RS09695 (Asuc_1870) rpiA 2059321..2059980 (-) 660 WP_012073598.1 ribose-5-phosphate isomerase RpiA -
  ASUC_RS09700 (Asuc_1871) hemW 2060192..2061358 (-) 1167 WP_404799676.1 radical SAM family heme chaperone HemW -
  ASUC_RS09705 (Asuc_1872) rdgB 2061372..2061971 (-) 600 WP_012073600.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ASUC_RS09710 (Asuc_1873) comE1/comEA 2062087..2062428 (-) 342 WP_012073601.1 helix-hairpin-helix domain-containing protein Machinery gene
  ASUC_RS09715 (Asuc_1874) ispH 2062627..2063571 (-) 945 WP_012073602.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ASUC_RS09720 (Asuc_1875) lspA 2063568..2064059 (-) 492 WP_012073603.1 signal peptidase II -
  ASUC_RS09725 (Asuc_1876) ileS 2064270..2067074 (-) 2805 WP_041834667.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 11996.73 Da        Isoelectric Point: 7.0142

>NTDB_id=28530 ASUC_RS09710 WP_012073601.1 2062087..2062428(-) (comE1/comEA) [Actinobacillus succinogenes 130Z]
MKVLKTLLLSGLMMGSLAGNFALAAEQNGAPEADVKQTQPVAEPQSVAADKLNINSATASEISKSLIGIGAKKAEAIVQY
REKHGNFTEAEQLLEVQGIGKATLDKNRDRLSF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=28530 ASUC_RS09710 WP_012073601.1 2062087..2062428(-) (comE1/comEA) [Actinobacillus succinogenes 130Z]
ATGAAGGTATTAAAAACATTATTGCTATCCGGTTTGATGATGGGATCTTTAGCGGGCAACTTTGCGTTAGCGGCGGAACA
GAACGGGGCGCCGGAAGCCGATGTGAAACAGACACAACCCGTAGCGGAACCCCAAAGCGTGGCTGCTGATAAACTCAATA
TCAACAGCGCGACGGCAAGTGAAATTTCCAAATCTTTAATCGGAATCGGTGCGAAAAAAGCGGAAGCTATCGTACAATAT
CGTGAAAAACACGGTAATTTCACTGAGGCGGAACAACTGCTAGAAGTGCAGGGAATCGGTAAAGCAACGCTGGATAAAAA
CCGGGATCGCCTTAGTTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6VQH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

63.158

100

0.637
  comEA/comE1 Glaesserella parasuis strain SC1401

67.606

62.832

0.425

Multiple sequence alignment