Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DA456_RS11055 Genome accession   NZ_CP028490
Coordinates   2625982..2628198 (-) Length   738 a.a.
NCBI ID   WP_057419558.1    Uniprot ID   A0AAD0MVL2
Organism   Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2620982..2633198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA456_RS11025 (DA456_11025) murB 2621782..2622801 (-) 1020 WP_017279274.1 UDP-N-acetylmuramate dehydrogenase -
  DA456_RS11030 (DA456_11030) kdsB 2622836..2623600 (-) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DA456_RS11035 (DA456_11035) - 2623597..2623782 (-) 186 WP_002552679.1 Trm112 family protein -
  DA456_RS11040 (DA456_11040) lpxK 2623800..2624795 (-) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  DA456_RS11045 (DA456_11045) - 2624795..2625226 (-) 432 WP_003317468.1 biopolymer transporter ExbD -
  DA456_RS11050 (DA456_11050) exbB 2625223..2625939 (-) 717 WP_017279277.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DA456_RS11055 (DA456_11055) comA 2625982..2628198 (-) 2217 WP_057419558.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DA456_RS11060 (DA456_11060) - 2628335..2629123 (-) 789 WP_003421319.1 ABC transporter permease -
  DA456_RS11065 (DA456_11065) - 2629120..2630052 (-) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  DA456_RS11070 (DA456_11070) - 2630236..2630859 (-) 624 WP_057419559.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80190.29 Da        Isoelectric Point: 10.0738

>NTDB_id=285295 DA456_RS11055 WP_057419558.1 2625982..2628198(-) (comA) [Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)]
MRTGMIALALGLLALRFLPALPPTWLLLMMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPACAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRSLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLMWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILSLIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPVWAWWSSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGSPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=285295 DA456_RS11055 WP_057419558.1 2625982..2628198(-) (comA) [Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGACCTGGCTATT
GCTGATGATGCCGATACTGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCGCTGGCGTTGTTCCTGCTCGGTTTCACGT
GGGCGTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGTGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTACGGCGGCCAGCCCGTTAACAGCGGGGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGACCGTCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACTGGC
ACGGTGGTGGATGGTCAGCTATTGGCACCCGCGTGTGCCGCCTGGCGCGATGCGATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGATTGTCGAGTACCGACTGGCAGGTAT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTCTTTGCCCTGGCTGCCGTGGGCGTGTGCGCTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTTGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGATGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGAGCCTGATTTTCAGTGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAGTGGCTGATCGCCGTTGGCTTGTTGCCGATCTTGCTGGCGCTGAACT
TGCCGATCAGCCTCAGTGGGCCGTTCGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTAGTCGGGGAAGGTCTGTTATGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCGGCAGCGTTGCCGGCCTGGCTGCCCAGTGCGGTGCCGGTCTGGGCATGGTGGTCGAGTC
TGCTCGGGGCCTTGCTCTTGTTACTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGATGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCCCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGATCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.592

97.019

0.598
  comA Ralstonia pseudosolanacearum GMI1000

34.52

100

0.394

Multiple sequence alignment