Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DA456_RS11050 Genome accession   NZ_CP028490
Coordinates   2625223..2625939 (-) Length   238 a.a.
NCBI ID   WP_017279277.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2620223..2630939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA456_RS11025 (DA456_11025) murB 2621782..2622801 (-) 1020 WP_017279274.1 UDP-N-acetylmuramate dehydrogenase -
  DA456_RS11030 (DA456_11030) kdsB 2622836..2623600 (-) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DA456_RS11035 (DA456_11035) - 2623597..2623782 (-) 186 WP_002552679.1 Trm112 family protein -
  DA456_RS11040 (DA456_11040) lpxK 2623800..2624795 (-) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  DA456_RS11045 (DA456_11045) - 2624795..2625226 (-) 432 WP_003317468.1 biopolymer transporter ExbD -
  DA456_RS11050 (DA456_11050) exbB 2625223..2625939 (-) 717 WP_017279277.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DA456_RS11055 (DA456_11055) comA 2625982..2628198 (-) 2217 WP_057419558.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DA456_RS11060 (DA456_11060) - 2628335..2629123 (-) 789 WP_003421319.1 ABC transporter permease -
  DA456_RS11065 (DA456_11065) - 2629120..2630052 (-) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  DA456_RS11070 (DA456_11070) - 2630236..2630859 (-) 624 WP_057419559.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25790.32 Da        Isoelectric Point: 7.9113

>NTDB_id=285294 DA456_RS11050 WP_017279277.1 2625223..2625939(-) (exbB) [Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=285294 DA456_RS11050 WP_017279277.1 2625223..2625939(-) (exbB) [Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTAGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCCGGGGCCACCGCCAATGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGGTCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment