Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EGY27_RS25080 Genome accession   NZ_CP033835
Coordinates   5079230..5081242 (-) Length   670 a.a.
NCBI ID   WP_003150902.1    Uniprot ID   A0A2R3IUR1
Organism   Pseudomonas aeruginosa strain FDAARGOS_570     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5074230..5086242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY27_RS25065 (EGY27_24950) - 5075620..5076540 (-) 921 WP_033977391.1 LysR family transcriptional regulator -
  EGY27_RS25070 (EGY27_24955) - 5076643..5077677 (+) 1035 WP_003150904.1 HlyD family secretion protein -
  EGY27_RS25075 (EGY27_24960) - 5077727..5079226 (+) 1500 WP_074197481.1 MDR family MFS transporter -
  EGY27_RS25080 (EGY27_24965) uvrB 5079230..5081242 (-) 2013 WP_003150902.1 excinuclease ABC subunit UvrB Machinery gene
  EGY27_RS25085 (EGY27_24970) - 5081429..5082625 (+) 1197 WP_003150900.1 amino acid aminotransferase -
  EGY27_RS25095 (EGY27_24980) comE1/comEA 5082843..5083166 (-) 324 WP_003150898.1 ComEA family DNA-binding protein Machinery gene
  EGY27_RS25100 (EGY27_24985) - 5083357..5085354 (-) 1998 WP_033977396.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76069.29 Da        Isoelectric Point: 5.0933

>NTDB_id=285251 EGY27_RS25080 WP_003150902.1 5079230..5081242(-) (uvrB) [Pseudomonas aeruginosa strain FDAARGOS_570]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYDNELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=285251 EGY27_RS25080 WP_003150902.1 5079230..5081242(-) (uvrB) [Pseudomonas aeruginosa strain FDAARGOS_570]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAGGCCATCCGGCAGATGGTCGAGGGGTT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTCGGAGTGACGGGGTCGGGCAAGACCTTCAGCATCGCCAACGTGATCGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACTCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTT
CCGCATAATTCGGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCATCCTCCGATACCTA
TATCGAGAAGGACTCGTCGATCAACGACCACATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGGCCGG
ATGCGATCATCGTCGCCACCGTGTCGTCCATCTACGGCCTCGGCGACCCCGCCTCGTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGTGAGCTGCTACGGCGCCTGACCAGCCTGCAGTACACCCGCAACGACATGGACTT
CGCCCGCGCGACCTTCCGTGTGCGTGGCGACGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATCCGTGTCG
AGCTGTTCGACGACGAAGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACTCCGCGCGAGACGCTGCTGGAGGCGGTCGATCAGATCAAAGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACGCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTACCTTTCCGGGCGCGCCCCCGGCGAGCCG
CCGCCAACGCTCTATGACTACCTGCCGGCCAACTCGCTGCTGGTCATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
CGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAAACCCTGGTGGAATACGGTTTCCGTCTGCCTTCGGCTTTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTTTCCGCGACCCCCGGGCCCTACGAGGCG
GAGCACGCCGGGCGGGTCATCGAACAGGTGGTACGACCCACCGGCCTGGTCGATCCGGAGATCGAGGTGCGCCCGGCGAT
GACCCAGGTCGACGACCTGCTGTCGCAGATCCGCCAGCGCGTGGCCAAGGACGAGCGGGTGCTGGTGACCACCCTGACCA
AGCGCATGGCCGAAGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTCCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGGGTGGAGATCATCCGCGACCTGCGCTCCGGCGCCTTCGACGTGCTGGTGGGAATCAACCTCCTGCGCGAGGG
CCTGGACATGCCGGAGGTATCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGTTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATTCTTTACGCCGACAACGTCACCGGCTCGATGCAG
CGCGCGATCGACGAGACCGAGCGGCGGCGGGCCAAGCAGATCGCCTTCAACGAAGCCCACGGCATCGTGCCCAAGGGCGT
GCGCAAGGACATCAAGGACATCCTCGAGGGCGCGGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTCG
CGGAGGAGAGCGGGCGCTACGACAACGAACTGCGTTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAGCTGGAGGAAAAG
ATGTACCAGTTGGCTCGCGACCTGGAGTTCGAAGCCGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-248)

UvrB/uvrC motif (UVR)

(632-665)

Ultra-violet resistance protein B (UvrB)

(550-592)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

Type III restriction enzyme, res subunit (ResIII)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IUR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.991

98.06

0.569
  uvrB Streptococcus pneumoniae R6

57.991

98.06

0.569
  uvrB Streptococcus pneumoniae D39

57.991

98.06

0.569