Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DA379_RS14550 Genome accession   NZ_CP028441
Coordinates   2926853..2928238 (-) Length   461 a.a.
NCBI ID   WP_003151388.1    Uniprot ID   -
Organism   Bacillus velezensis strain 131-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2921853..2933238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS14515 flgL 2922028..2922945 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  DA379_RS14520 flgK 2922957..2924474 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  DA379_RS14525 - 2924490..2924972 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DA379_RS14530 flgM 2924987..2925253 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DA379_RS14535 - 2925323..2925742 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DA379_RS14540 comFC 2925816..2926505 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  DA379_RS14545 - 2926511..2926795 (-) 285 WP_003151389.1 competence protein ComFB -
  DA379_RS14550 comFA 2926853..2928238 (-) 1386 WP_003151388.1 DEAD/DEAH box helicase Machinery gene
  DA379_RS14555 - 2928346..2929194 (-) 849 WP_003151387.1 DegV family protein -
  DA379_RS14560 degU 2929292..2929981 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DA379_RS14565 degS 2930058..2931221 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  DA379_RS14570 - 2931444..2932091 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52572.12 Da        Isoelectric Point: 10.1848

>NTDB_id=285101 DA379_RS14550 WP_003151388.1 2926853..2928238(-) (comFA) [Bacillus velezensis strain 131-4]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=285101 DA379_RS14550 WP_003151388.1 2926853..2928238(-) (comFA) [Bacillus velezensis strain 131-4]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment