Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   DA379_RS14540 Genome accession   NZ_CP028441
Coordinates   2925816..2926505 (-) Length   229 a.a.
NCBI ID   WP_198317760.1    Uniprot ID   -
Organism   Bacillus velezensis strain 131-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2920816..2931505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS14505 fliW 2920907..2921338 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  DA379_RS14510 - 2921368..2921937 (-) 570 WP_003151397.1 DUF6470 family protein -
  DA379_RS14515 flgL 2922028..2922945 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  DA379_RS14520 flgK 2922957..2924474 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  DA379_RS14525 - 2924490..2924972 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DA379_RS14530 flgM 2924987..2925253 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DA379_RS14535 - 2925323..2925742 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DA379_RS14540 comFC 2925816..2926505 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  DA379_RS14545 - 2926511..2926795 (-) 285 WP_003151389.1 competence protein ComFB -
  DA379_RS14550 comFA 2926853..2928238 (-) 1386 WP_003151388.1 DEAD/DEAH box helicase Machinery gene
  DA379_RS14555 - 2928346..2929194 (-) 849 WP_003151387.1 DegV family protein -
  DA379_RS14560 degU 2929292..2929981 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DA379_RS14565 degS 2930058..2931221 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25262.97 Da        Isoelectric Point: 8.2933

>NTDB_id=285100 DA379_RS14540 WP_198317760.1 2925816..2926505(-) (comFC) [Bacillus velezensis strain 131-4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEMRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=285100 DA379_RS14540 WP_198317760.1 2925816..2926505(-) (comFC) [Bacillus velezensis strain 131-4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAATGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment