Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DA376_RS05440 Genome accession   NZ_CP028437
Coordinates   1042668..1043246 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain DR-08     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1037668..1048246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA376_RS20170 - 1038168..1038683 (-) 516 WP_369878811.1 methyl-accepting chemotaxis protein -
  DA376_RS20175 - 1038975..1039349 (-) 375 Protein_992 protoglobin domain-containing protein -
  DA376_RS05425 (DA376_05425) - 1039583..1041106 (-) 1524 WP_032874378.1 FAD-dependent oxidoreductase -
  DA376_RS05430 (DA376_05430) - 1041231..1042088 (+) 858 WP_032874380.1 SDR family oxidoreductase -
  DA376_RS05435 (DA376_05435) - 1042119..1042352 (-) 234 WP_032874382.1 IDEAL domain-containing protein -
  DA376_RS05440 (DA376_05440) comK 1042668..1043246 (+) 579 WP_003155179.1 competence protein ComK Regulator
  DA376_RS05445 (DA376_05445) - 1043392..1043760 (+) 369 WP_032874384.1 iron chaperone -
  DA376_RS05450 (DA376_05450) - 1043787..1044158 (+) 372 WP_032874386.1 iron chaperone -
  DA376_RS05455 (DA376_05455) - 1044292..1045002 (-) 711 WP_003155170.1 YrpD family protein -
  DA376_RS05460 (DA376_05460) - 1045198..1045467 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  DA376_RS05465 (DA376_05465) - 1045500..1045817 (-) 318 WP_003155166.1 YbjQ family protein -
  DA376_RS05470 (DA376_05470) - 1045858..1047327 (-) 1470 WP_015388467.1 sodium:solute symporter -
  DA376_RS05475 (DA376_05475) - 1047324..1047524 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  DA376_RS05480 (DA376_05480) - 1047645..1048004 (-) 360 WP_012117241.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=284836 DA376_RS05440 WP_003155179.1 1042668..1043246(+) (comK) [Bacillus velezensis strain DR-08]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=284836 DA376_RS05440 WP_003155179.1 1042668..1043246(+) (comK) [Bacillus velezensis strain DR-08]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment