Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SK637_RS08155 Genome accession   NZ_CP028415
Coordinates   1634514..1636472 (-) Length   652 a.a.
NCBI ID   WP_033689366.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629514..1641472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS08135 (SK637_01590) - 1630723..1631427 (-) 705 WP_033689362.1 tyrosine-protein kinase -
  SK637_RS08140 (SK637_01591) - 1631438..1632130 (-) 693 WP_033689363.1 CspC family polysaccharide chain length determinant protein -
  SK637_RS08145 (SK637_01592) cps4B 1632139..1632870 (-) 732 WP_033689364.1 capsular polysaccharide biosynthesis protein Cps4B -
  SK637_RS08150 (SK637_01593) - 1632877..1634322 (-) 1446 WP_033689365.1 LCP family protein -
  SK637_RS08155 (SK637_01594) amiA3 1634514..1636472 (-) 1959 WP_033689366.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS08160 (SK637_01595) - 1636668..1638275 (-) 1608 WP_033689367.1 glycoside hydrolase family 13 protein -
  SK637_RS08165 (SK637_01596) - 1638428..1639912 (+) 1485 WP_033689368.1 DUF1846 domain-containing protein -
  SK637_RS08170 (SK637_01597) - 1640007..1640489 (+) 483 WP_033689369.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72537.60 Da        Isoelectric Point: 4.9288

>NTDB_id=284726 SK637_RS08155 WP_033689366.1 1634514..1636472(-) (amiA3) [Streptococcus mitis strain SK637]
MTTKKRVLSAGLTFAAALLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSDINLAD
AQDAYFNKEKAQAKFAEAKKDLASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNLVIDVQQLSTDEYNNVA
FLAPTAADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAREDKAKIASLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTIKQYEEAKAKWEQESKKAI
EKAQKEAENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=284726 SK637_RS08155 WP_033689366.1 1634514..1636472(-) (amiA3) [Streptococcus mitis strain SK637]
ATGACTACAAAAAAGCGTGTCCTTAGTGCAGGCCTGACTTTTGCGGCTGCTTTGCTTTTAGCTGCTTGCGGACAATCTGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTATTTATTAGACTACTACGCTGATA
ATACAGCCATCATTACCAACCTAGTTGATGGTTTGCTTGAAAATGACAATCATGGAAATCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCAAGCGACGGTCTGACTTATACCTATAAACTGAGAAAAGATGCCAAATGGTTCACGGCGGACGGTGA
AGAGTACGCTCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAGTACGCAGTGGATAATAAATCCCAGGCCATTGACT
TGATTCAAAACTCGATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGAGTGAAAGCC
ATTGACGACCAGACTGTTGAGTATACTTTGGCACGCCCAGAACCGTACTGGAACTCAAAAACAACCAACAGTATTCTTTT
CCCAGTCAACGAAGAGTTTCTAAATTCAAAAGGCAAAGATTTTGGTACCTTATCTCCAGATAGCATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCTATTGAGTATGTGAAGAATCCGCATTACTATGATCATGACAAAGTA
TCGATTGAACACGTAAAATTGGCTTACTTTGACGGCTCAGACCAAGAATTGACTATCCGTAACTTTGAAAGTGGAGCCTA
TTCAATCGCTGGGGTTTATCCAAATAGTTCTAACTTTGCTAAGACCAAGGAGAAATATAAGGATAATATCGTCTATAGCT
TGCAGGACAAGACTTCTTGGTATTTTAATTTCAACGTCAATCGTAAGGCCTACAATCACACTGCTAAAACGACAGATGAG
CAGAAGAAGTCAACTGAGACAGCTGTCTTGAACAAAAACTTCCGCCAAGCGGTGAACTTTGCCTTGGACCGCACAGCCTA
TTCTGCTCAGTCAAATGGGGAAGAAGCAGCTAGCAAGACCCTTCGTAACACCCTAGTGCCTCCTACATTTGTCCAAGTTG
GAGACAAGACTTTTGGAGAAGTAGTTGCTTCTAAATTGGTCAACTATGGCACAGAATGGTCAGATATTAACTTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCCAAAAAAGACTTGGCAAGTCAAGGTGT
GACCTTCCCAATTCACTTGGATGTAGCTGTTGATCAGACAAGTAAAAATGCTGTGACTGGTATGAATTCTGTAAAACAGA
CTCTTGAGTCTGTTTTAGGTGCTGATAATCTTGTTATTGACGTTCAGCAACTCTCTACAGATGAGTACAATAACGTAGCC
TTCTTAGCGCCAACAGCAGCTGATCGAGACTACGATTTGAACTTTGATGGTTGGGTAGGTGACTACCAAGATCCATCAAC
TTATCTCAATCCTTTCAATGCAGAGGATGGATTCTACCTCAAGATCTTTGGTCTAGATGCTCGAGAAGATAAAGCTAAGA
TTGCTAGCCTGGGGCTTGATACCTACACCAAGATGCTCAAAGATGCAGATAGTGAAAATAAAGATGTAGCCAAACGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCCATGTCAAGTGGTGGTACTGCATC
TGTAACCAAAGTAACGCCATTTACAAGAGGGTATTCACTGGTCGGCATCAAGGGTGACGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAATCAAACAGTATGAAGAAGCCAAGGCCAAATGGGAGCAAGAAAGCAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.533

100

0.509
  amiA3 Streptococcus thermophilus LMG 18311

50.076

100

0.505
  amiA Streptococcus salivarius strain HSISS4

50.152

100

0.505

Multiple sequence alignment