Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SK637_RS08080 Genome accession   NZ_CP028415
Coordinates   1617427..1619406 (-) Length   659 a.a.
NCBI ID   WP_033689353.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612427..1624406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS08060 (SK637_01575) gpsB 1613513..1613842 (-) 330 WP_033689349.1 cell division regulator GpsB -
  SK637_RS08065 (SK637_01576) - 1613915..1614442 (-) 528 WP_033689350.1 DUF1273 domain-containing protein -
  SK637_RS08070 (SK637_01577) recU 1614509..1615105 (+) 597 WP_033689351.1 Holliday junction resolvase RecU -
  SK637_RS08075 (SK637_01578) pbp1a 1615102..1617285 (+) 2184 WP_033689352.1 penicillin-binding protein PBP1A -
  SK637_RS08080 (SK637_01579) amiA 1617427..1619406 (-) 1980 WP_033689353.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS08085 (SK637_01580) glf 1619608..1620710 (-) 1103 Protein_1510 UDP-galactopyranose mutase -
  SK637_RS08090 (SK637_01581) - 1620712..1622136 (-) 1425 WP_033689354.1 flippase -
  SK637_RS08095 (SK637_01582) - 1622196..1623248 (-) 1053 WP_033689355.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72958.56 Da        Isoelectric Point: 4.7550

>NTDB_id=284725 SK637_RS08080 WP_033689353.1 1617427..1619406(-) (amiA) [Streptococcus mitis strain SK637]
MKTRKVLALAGVTLLAVGVLAACSGGSGAKGEQTFAFTYETEPDNLNYLTTGKAATANITSNVIDGLLENDRYGNLIPSM
AEDWSVSKDGLTYTYKIRKDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSEALYLVQDSIKGLDAYAKGENKDFSQVGI
KALDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKAGDPNSILYNGPFVLKSLVAKSSVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKDMKDNIVYTQQDSTTYLVGTNIDRQSYKYTSKT
SDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
FADAQDGLYNPNKAKAEFAKAKTALQAEGVTFPIHLDMPVDQTATTKVQRVQSFKQSVEETLGTDNVVIDIQQLQKDEVN
NITYFAETAAGEDWDISDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGKDNVAAKKVGLYDYEKLVTEADDETTD
VAKRYDKYAAAQAWLTDSALIIPTTSLTGRPILSKMVPFTMPFAFSGNKGTSDPLLYKYLELQDKAVTVDEYQKAQDKWM
KEKEESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=284725 SK637_RS08080 WP_033689353.1 1617427..1619406(-) (amiA) [Streptococcus mitis strain SK637]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTGACTTTATTAGCAGTGGGTGTTTTAGCTGCTTGTTCAGGGGGGTC
AGGTGCTAAAGGTGAGCAGACCTTTGCCTTTACTTATGAGACTGAACCAGATAATCTCAACTATTTGACAACTGGTAAGG
CAGCGACTGCCAATATTACTAGTAATGTGATTGATGGATTGCTTGAAAATGACCGCTATGGGAATTTGATTCCCTCTATG
GCAGAGGACTGGTCTGTTTCTAAGGATGGTTTGACTTATACCTATAAAATTCGTAAAGACGCCAAGTGGTACACGTCTGA
GGGAGAAGAGTATGCTCCTGTTAAGGCTCAGGACTTTGTGACAGGACTTAAATATGCGACAGATAAGAAATCTGAAGCTC
TTTACTTGGTACAGGATTCAATCAAAGGTTTGGATGCATACGCTAAAGGGGAAAATAAAGATTTCTCTCAAGTTGGGATT
AAAGCTCTTGATGATCAAACAGTCCAATACACATTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACCATGGGTGT
GCTTGCGCCAGTCAATGAAGAGTTTTTAAACTCAAAAGGGGATGATTTTGCCAAGGCTGGAGATCCAAACAGTATTCTCT
ACAATGGACCTTTCGTTTTGAAATCTCTAGTAGCGAAATCATCTGTAGAGTTTGCGAAAAATCCTAATTACTGGGATAAG
GACAATGTGCATATTGACAAGGTCAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCTGCAGAAAACTTTAAAGA
TGGTAGCCTTACAGCAGCTCGTCTCTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAAAAAGATATGAAAGACAATATTG
TCTATACCCAACAAGACTCTACGACTTATCTAGTTGGTACAAATATTGATCGTCAGTCTTATAAATATACTTCTAAGACC
AGCGACGAACAAAAGACTTCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGACCG
TACGGCCTATGCTTCACAAGTGAACGGTGCCAGTGGTGCAAGCAAAATCTTGCGTAATCTCTTTGTACCACCAACATTTG
TTCAAGCAGATGGGAAAAACTTTGGCGATATGGTCAAAGAAAAATTGGTAACTTATGGGGATGAATGGAAGGATGTCAAC
TTCGCAGATGCTCAAGATGGTCTCTACAATCCAAACAAGGCGAAGGCTGAATTTGCGAAGGCTAAGACTGCTCTTCAGGC
AGAAGGAGTGACCTTCCCAATTCATTTGGATATGCCAGTTGATCAGACAGCAACTACAAAAGTTCAACGTGTCCAATCTT
TCAAACAATCGGTTGAAGAAACCTTGGGTACAGATAATGTTGTCATTGATATTCAACAGCTACAAAAGGATGAAGTAAAC
AATATTACCTACTTTGCTGAAACAGCAGCTGGGGAAGATTGGGATATTTCAGATAATGTCGGTTGGGGTCCAGACTTTGC
CGATCCATCAACCTACCTTGATATCATCAAACCATCAGTTGGTGAAAGCACTAAAACATATTTAGGATTTGACTCAGGGA
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAAGCTGATGATGAGACTACAGAT
GTTGCTAAACGATATGATAAATACGCTGCTGCCCAAGCTTGGTTGACAGATAGTGCCTTGATTATCCCAACAACATCACT
CACTGGTCGCCCAATCTTGTCTAAGATGGTACCATTTACGATGCCATTTGCCTTCTCTGGTAACAAGGGGACAAGCGATC
CGCTCCTATACAAATACTTGGAACTTCAAGACAAGGCAGTCACTGTAGATGAATACCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGAAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.939

100

0.59
  amiA3 Streptococcus thermophilus LMD-9

58.485

100

0.586
  amiA3 Streptococcus thermophilus LMG 18311

58.182

100

0.583

Multiple sequence alignment