Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SK637_RS06940 Genome accession   NZ_CP028415
Coordinates   1341985..1343943 (-) Length   652 a.a.
NCBI ID   WP_033689117.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1336985..1348943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS06920 (SK637_01351) - 1337346..1338488 (-) 1143 WP_033689112.1 Abi family protein -
  SK637_RS06925 (SK637_01352) - 1338780..1339946 (-) 1167 WP_033689113.1 MalY/PatB family protein -
  SK637_RS06930 (SK637_01353) - 1339954..1341048 (-) 1095 WP_033689114.1 cystathionine gamma-synthase -
  SK637_RS06935 (SK637_01354) - 1341213..1341668 (-) 456 WP_033689115.1 hypothetical protein -
  SK637_RS06940 (SK637_01355) amiA 1341985..1343943 (-) 1959 WP_033689117.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS06945 (SK637_01356) - 1344148..1345770 (-) 1623 WP_033689118.1 putative polysaccharide biosynthesis protein -
  SK637_RS06950 (SK637_01357) - 1345876..1347321 (+) 1446 WP_033689119.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SK637_RS06955 (SK637_01358) - 1347369..1347560 (-) 192 WP_033689120.1 CsbD family protein -
  SK637_RS06960 (SK637_01359) - 1347662..1348312 (-) 651 WP_050489880.1 DUF1803 domain-containing protein -
  SK637_RS06965 (SK637_01360) - 1348296..1348790 (-) 495 WP_033689121.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72863.22 Da        Isoelectric Point: 4.9072

>NTDB_id=284717 SK637_RS06940 WP_033689117.1 1341985..1343943(-) (amiA) [Streptococcus mitis strain SK637]
MKKSKAKYATLAGIVLSAGILLSACGNSSTASKAYNYVYTSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYIPSL
AEDWSVSKDGLTYTYKLRKDAKWYTADGDEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYITGKTSDFSTVGV
KALDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDAK
NVFVDDVKLAYYDGSDQDALARNFVEGAYSYARLYPNSSSFEGIKEKNKDNIIYRLQEPTSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVTINGKDFGEVVSSKMVNYGKEWQGINF
ADAQDPYYNAEKAKAKFAEAKKELQAKGVQFPIHLDMTVDQAVKKGVQEANSMKQSIEAALGAENVVIDIQQLTTEDYDN
TSYLAQTAAQKDYDLYNSGWGPDYQDPSTYLDIFNTNSGGVLQNLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDIAKR
YEKYAEIQAWLVDSSLAIPNVSLGGTPVLRRTVPFSEPFSQAGNKGIESYKYLKVQDKTVTKDEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=284717 SK637_RS06940 WP_033689117.1 1341985..1343943(-) (amiA) [Streptococcus mitis strain SK637]
ATGAAAAAGTCTAAGGCCAAGTATGCAACACTTGCAGGTATCGTGTTAAGCGCAGGTATTTTATTAAGCGCGTGTGGGAA
TTCTAGCACAGCGTCAAAAGCATATAACTATGTTTATACTAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACGACTAATGATATTGTGACTAATCTAGTAGATGGTCTCATGGAAAATGACCAGTATGGGAACTATATACCATCCTTG
GCGGAGGATTGGAGTGTTTCTAAAGATGGTTTGACCTATACCTATAAACTTCGTAAAGACGCTAAATGGTATACTGCAGA
TGGAGATGAATATGCTCCAGTAACTGCCCAAGATTTTGTCACTGGGTTGAAATACGCTGCTGATAAAAAATCAGAAGCCT
TGTACTTGGTGCAAGAATCCGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGAGTT
AAGGCTCTTGATGACCAAACAGTTCAATATACCTTGACACGACCAGAATCTTATTGGAACTCAAAAACAACTTCAACCAT
TCTCTTCCCAGTTAACGCTGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTCATCGAATTCAAGAAAAATCCAAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCTCGTAACTTTGTCGAGGG
GGCCTATAGCTATGCTCGTCTCTATCCGAACAGTTCAAGTTTTGAAGGAATTAAAGAGAAGAACAAGGATAATATTATCT
ATAGATTGCAAGAGCCTACTTCTTATTTCTTAAACTTTAACCTAGATAGAAAATCTTATAAATTCACTTCCAAGACAAGT
GATGCTGAAAAGAAATCGACTCAGGAAGCAGTTCTTAACAAAAACTTCCGTCAAGCCATTAACTTTGCCTATGATCGTAC
AGCCTATGGGGCTCAATCTCAAGGGGAAGACGGAGCAACTAAGATTTTGCGTAACCTAGTCGTTCCTCCTAATTTTGTAA
CCATCAATGGAAAAGACTTTGGTGAAGTAGTATCCTCTAAGATGGTTAACTATGGTAAGGAATGGCAAGGAATCAACTTT
GCGGATGCCCAAGATCCATACTACAATGCTGAAAAAGCCAAAGCCAAATTTGCAGAGGCTAAGAAAGAACTCCAAGCCAA
AGGAGTCCAATTCCCAATCCACTTGGACATGACAGTTGACCAAGCTGTTAAAAAGGGTGTTCAAGAGGCAAATTCTATGA
AGCAATCTATTGAAGCAGCCTTAGGTGCAGAGAACGTTGTAATTGATATTCAACAACTCACTACTGAAGATTATGACAAT
ACAAGCTATTTGGCTCAGACAGCAGCTCAGAAGGATTATGATCTTTACAACAGTGGTTGGGGTCCTGATTACCAAGATCC
TTCAACCTATCTCGATATTTTTAATACTAATAGTGGTGGTGTTCTGCAAAATCTAGGTTTAGAGCCAGGTGAAGCCAATG
ACAAAGCTAAGGCTGTTGGGCTGGATGTTTATACTCAAATGCTGGAAGAAGCTAACAAGGAACAAGATATTGCAAAACGT
TATGAAAAGTATGCTGAAATCCAAGCTTGGTTGGTAGATAGCTCTCTAGCCATTCCAAACGTTTCCCTGGGTGGAACACC
AGTATTGAGAAGAACAGTTCCTTTCTCAGAACCATTCTCACAAGCTGGTAATAAAGGTATTGAATCATATAAATACCTCA
AAGTACAAGATAAGACAGTCACAAAAGACGAATATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.599

100

0.581
  amiA3 Streptococcus thermophilus LMG 18311

56.601

100

0.572
  amiA3 Streptococcus thermophilus LMD-9

56.449

100

0.571

Multiple sequence alignment