Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SK637_RS04095 Genome accession   NZ_CP028415
Coordinates   748129..750096 (+) Length   655 a.a.
NCBI ID   WP_033688669.1    Uniprot ID   A0A1T0C9D4
Organism   Streptococcus mitis strain SK637     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 743129..755096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS04080 (SK637_00796) - 743319..744137 (+) 819 WP_033688664.1 aminoglycoside 6-adenylyltransferase -
  SK637_RS04085 (SK637_00797) parC 744477..746948 (+) 2472 WP_078352272.1 DNA topoisomerase IV subunit A -
  SK637_RS04090 (SK637_00798) - 747084..748106 (+) 1023 WP_033688667.1 branched-chain amino acid aminotransferase -
  SK637_RS04095 (SK637_00799) amiA3 748129..750096 (+) 1968 WP_033688669.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS04100 (SK637_00800) - 750194..750424 (+) 231 WP_000037113.1 DUF2969 domain-containing protein -
  SK637_RS04115 (SK637_00803) rpsA 750797..751999 (+) 1203 WP_001001630.1 30S ribosomal protein S1 -
  SK637_RS04120 (SK637_00804) - 752085..752582 (+) 498 WP_033688670.1 GAF domain-containing protein -
  SK637_RS04125 (SK637_00805) dnaX 752582..754237 (+) 1656 WP_033688671.1 DNA polymerase III subunit gamma/tau -
  SK637_RS04130 (SK637_00806) - 754265..754459 (+) 195 WP_001081602.1 DUF3272 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72675.29 Da        Isoelectric Point: 5.1301

>NTDB_id=284705 SK637_RS04095 WP_033688669.1 748129..750096(+) (amiA3) [Streptococcus mitis strain SK637]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFDKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLTIMDPKSGSAMKHLGITKGKDKDVVAKVGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=284705 SK637_RS04095 WP_033688669.1 748129..750096(+) (amiA3) [Streptococcus mitis strain SK637]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGCACAACAGCTCTATTAGTGGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCGGCATCTTTGGATTATAGTATAGCGACTC
GTACATCTACAACAGATGTCATCGGGAACGTGGTTGATGGCTTGATGGAAAACGACCAATACGGAAATGTTATTCCTTCC
TTGGCTGAAGATTGGTCTGTGTCAAAAGATGGTTTGACTTATACCTACAAACTACGTAAAGGAGTTAAATGGTACACTTC
TGAAGGTGAAGAATATGCAGAAGTAACAGCCCATGACTTTGTAACAGGATTGAAACACGTAGCTGACGGTAAGTCAGACG
GTGTTTCTCTCATCCAAAATTCAATCAAGGGATTGGATGCCTACATGACTGGTGAGACCAATGATTTCTCTACAGTTGGT
GTCAAGGCCTTGGACGATTACACAGTTGAATATACCCTAAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACAACAGC
AACGATGTTGCCTGTAAATGAAGAGTTTTTGAAAGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGAATTCTCT
ACAATGGTCCTTATATCTTGAAGACCTTGACATCTAAATCGTTGATTGAATACGAGAAAAACCCAAATTACTGGGATAAA
GAAAAGGTAAAAATCGAGAAGATTAAATTGACTTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGCTTCTCTTC
TGGTGCCTATACGACAGCTCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTGGAACAATACGGAGATAAAATCA
CTTATAGTCCACAGGACTCAAGTAGCTATTACTTCACCTTTAACGTAAATCGCCAGTCATATAATAAAACTGCGAAAACA
AGTGAAGAGCAAAAGACTTCTACTAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
CCATTCTTATGCTGCTCAGTTAAATGGTGAAGATGGGGCGGACAAGATTATTCGTAACAGTTTAGTTCCAGATAACTTCG
TGCAAGCAGGTGGTAAGAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTACGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGACTCTATCTACAACCCTGACAAGGCTAAAGCAGCCTTTGACAAAGCTAAGAAAGATTTGGAATC
TAAAGGGGTAACTTTCCCAATTCACTTGGATGTTCCAGTTGAACAAACAGATACCATCGCCGTTCAACAAAGTAACTCTT
TCAAACAGTCAATCGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGACGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCTCAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAATAGTACAGGATGGGCTCCAAGCTATCAAGA
CCCAGCATCTTATTTAACTATCATGGATCCTAAATCAGGTTCTGCTATGAAACACCTAGGTATCACTAAAGGAAAAGACA
AGGATGTCGTAGCTAAGGTTGGTTTGGACCAGTATAAGAAATTATTGGATGATGCCGATTCAGAAACTACGAATCTTGAA
GAGCGCTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCCTCATCTGGTGG
TTCTCCAGTTGTAAGTAATGTAGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGTGACCCATATATCTTTA
AGGGAATGAAGTTGCAAAAAGATATCGTTACAACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAACGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T0C9D4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.03

100

0.534
  amiA Streptococcus salivarius strain HSISS4

52.584

100

0.528
  amiA3 Streptococcus thermophilus LMG 18311

52.424

100

0.528

Multiple sequence alignment