Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SK637_RS01495 Genome accession   NZ_CP028415
Coordinates   288114..290078 (+) Length   654 a.a.
NCBI ID   WP_033688096.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 283114..295078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS01470 (SK637_00290) - 283874..285265 (+) 1392 WP_033688093.1 Cof-type HAD-IIB family hydrolase -
  SK637_RS01475 (SK637_00291) - 285412..285864 (-) 453 WP_000079148.1 universal stress protein -
  SK637_RS01480 (SK637_00292) - 286026..286328 (+) 303 WP_033688094.1 hypothetical protein -
  SK637_RS01485 (SK637_00293) - 286482..287696 (+) 1215 WP_033688095.1 pyridoxal phosphate-dependent aminotransferase -
  SK637_RS01490 (SK637_00294) rpmH 287841..287975 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  SK637_RS01495 (SK637_00295) amiA 288114..290078 (+) 1965 WP_033688096.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS01500 (SK637_00296) - 290285..292129 (-) 1845 WP_033688097.1 APC family permease -
  SK637_RS01510 (SK637_00297) - 292286..293059 (+) 774 WP_033688098.1 TatD family hydrolase -
  SK637_RS01515 (SK637_00298) rnmV 293059..293625 (+) 567 WP_033688099.1 ribonuclease M5 -
  SK637_RS01520 (SK637_00299) - 293733..294032 (+) 300 WP_033688101.1 hypothetical protein -
  SK637_RS01525 (SK637_00300) rsmA 294045..294917 (+) 873 WP_001216838.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73031.13 Da        Isoelectric Point: 4.7082

>NTDB_id=284684 SK637_RS01495 WP_033688096.1 288114..290078(+) (amiA) [Streptococcus mitis strain SK637]
MKKSKVMLFGVMALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKSSDFGAVGV
KAVDDYTLQYTLNQPETYWNSKTTASILNPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFLNPDKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKDNVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKDKIGLADYKKLLDQADAEITDTQA
RYEKYAETQAWLTDSALFLPVQSGGANPIFRKTVPFTGPFSFVGNKGNADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=284684 SK637_RS01495 WP_033688096.1 288114..290078(+) (amiA) [Streptococcus mitis strain SK637]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGTTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGCGGGTCATCCCA
ATCAAGTAATGCAGACAAGACTTACTCTTATATCTTTGTCAGCAACCCAGATACCTTGGATTATATTACTTCTACACGAG
ACTCTACATCTAGTATCACAACCAACTTGATTGATGGGTTGTTGGAAAATGACCAGTATGGCAATCTCATCCCCTCTATG
GCTGAGTCATGGACTGTGTCAAAAGATGGCTTGACTTACACTTATAAGATCCGTCAGGGAGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCGGATGTAACAGCTCATGACTTTGTGACTGGTCTCAAGTATGCGGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTACAAGATTCCATCAAGGGTCTAGCAGACTATGTTGAAGGGAAATCATCTGATTTTGGAGCTGTTGGTGTT
AAGGCAGTGGATGATTACACGCTACAATACACTCTCAATCAACCTGAGACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAATCCTGTAAATGAAGCCTTCTTGAAGTCTAAGGGAGATGACTTTGGAAGTGTAACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAGTTTGATAAAAACCCTAATTACTGGGATAAGGAC
AATGTTAAAATTGAGAAAGTGAAACTTTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACAGATGGCCGTATCTTCCCAACAAGTTCAGTCTTTGCTGAACTCAAGAAGGGCAATGAGGACAAGATTACCT
ACACACCACAAAACTCAGTTACTTTCTACTATCTTTTCAACGTCAATCGTCAAAGTTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACAGATTCACGCGCAGCTATGCAGAATAAAGATTTCCGTCAGGCTATCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCACAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACAGTTACACCAAGTAACTTTGTCC
AAGTTGGAGATAAGAACTTTGGTGATATTGTCAATGAAAAAATTGTCAACTACGGTAAAGATTGGGCAAATATTAACCTA
AACGATGGTAAGCAAGCCTTCTTGAACCCTGACAAGGCCAAAGAGAAGTTTGCTAAGGCCAAAGAAAGTCTGCAAGCTCA
AGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAGTTGGATGTGCAACAGGCTGGATCTTTCA
AACAAACAGTGGAAGAAACCCTTGGTAAGGATAATGTAGTCATTGATGTTATCCAACTTTCTCCAGATGAAAAAGACCAA
GCAACCTACTTTGCAGATACAGCAGAACAAAAAGACTATGATATTGACATCTCAGGATGGGGTGGAGACTACTCAGATCC
TAAGACTTACCTAGCCATCCTTGATCCAGAGACAGGTTCTCAGTTGAAAAACATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTTAAGGACAAGATTGGTCTTGCTGATTATAAGAAACTCTTGGATCAAGCAGATGCGGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGAAACCCAAGCTTGGTTGACAGATAGCGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCTAA
TCCAATCTTCCGTAAGACTGTACCGTTTACAGGCCCATTCTCATTCGTTGGGAATAAAGGAAATGCAGACAACTACAAAT
ATGTTGAATTGCAAAAAGAGCCAGTAACCGCTAAACAGTACCAAGAACTCTATGAAAAATGGCTGAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCATATTCAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.015

100

0.554
  amiA3 Streptococcus thermophilus LMD-9

54.559

100

0.549
  amiA3 Streptococcus thermophilus LMG 18311

54.255

100

0.546

Multiple sequence alignment