Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM12261_RS07750 Genome accession   NZ_CP028414
Coordinates   1528419..1530398 (-) Length   659 a.a.
NCBI ID   WP_000857579.1    Uniprot ID   -
Organism   Streptococcus mitis NCTC 12261     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1523419..1535398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM12261_RS07730 (SM12261_1493) gpsB 1524504..1524833 (-) 330 WP_000146535.1 cell division regulator GpsB -
  SM12261_RS07735 (SM12261_1494) - 1524906..1525433 (-) 528 WP_004239174.1 DUF1273 domain-containing protein -
  SM12261_RS07740 (SM12261_1495) recU 1525500..1526096 (+) 597 WP_000248752.1 Holliday junction resolvase RecU -
  SM12261_RS07745 (SM12261_1496) pbp1a 1526093..1528276 (+) 2184 WP_001041321.1 penicillin-binding protein PBP1A -
  SM12261_RS07750 (SM12261_1497) amiA3 1528419..1530398 (-) 1980 WP_000857579.1 peptide ABC transporter substrate-binding protein Regulator
  SM12261_RS07755 (SM12261_1498) rfbD 1530697..1531560 (-) 864 WP_000600892.1 dTDP-4-dehydrorhamnose reductase -
  SM12261_RS07760 (SM12261_1499) rfbB 1531626..1532675 (-) 1050 WP_000141489.1 dTDP-glucose 4,6-dehydratase -
  SM12261_RS07765 (SM12261_1500) - 1532689..1533282 (-) 594 WP_000131475.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  SM12261_RS07770 (SM12261_1501) rfbA 1533283..1534152 (-) 870 WP_000676151.1 glucose-1-phosphate thymidylyltransferase RfbA -
  SM12261_RS07775 (SM12261_1502) - 1534231..1535295 (-) 1065 WP_000878660.1 sugar transferase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73016.60 Da        Isoelectric Point: 4.7769

>NTDB_id=284657 SM12261_RS07750 WP_000857579.1 1528419..1530398(-) (amiA3) [Streptococcus mitis NCTC 12261]
MKTRKVLALAGVTLLAAGVLAACSGGSATKGEQTFAFTYETDPDNLNYLTTSKAATSNITSNVIDGLFENDRYGNLVPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSQALYLVQDSIKGLDAYAKGENKDFSQVGI
KALDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSILYNGPYLLKSLVAKSSVEFAKNPNYWDK
DNVHVDKIKLSFWDGQDTSKPAENFKDGSLTAARLYPTNASFAELEKTMKDNIVYTQQDSTTYLVGTNIDRQSYKYTSKT
SDEQKTSTKKALLNKDFRQAIAFGLDRTAYASQVNGASGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSFKQSVEETLGTDNVVIDIQQLQKDEVL
NITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYFGFDSGTDNAAAKKVGLNDYEKLVTEAGNETID
VAKRYDKYAAAQAWLTDSALIIPTTSLTGRPILSKMVPFTMPFAFSGNKGTSDPLLYKYLELQDKAVTADEYQKAQDKWM
KEKEEFNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=284657 SM12261_RS07750 WP_000857579.1 1528419..1530398(-) (amiA3) [Streptococcus mitis NCTC 12261]
ATGAAAACAAGGAAAGTATTGGCTCTTGCGGGAGTCACTTTATTAGCAGCTGGTGTCTTAGCGGCTTGTTCTGGTGGTTC
TGCTACTAAAGGTGAGCAGACTTTTGCATTTACCTACGAGACAGACCCAGATAATCTCAACTATTTGACAACCAGCAAGG
CAGCTACTTCAAACATTACTAGTAACGTCATTGATGGATTGTTTGAAAATGACCGTTATGGGAATCTTGTTCCCTCTATG
GCAGAGGACTGGTCAGTTTCTAAAGATGGTTTGACCTACACTTATAAGATTCGTCAGGATGCCAAGTGGTACACATCTGA
AGGGGAAGAATATGCTCCTGTCAAGGCTCAAGACTTTGTAACAGGTCTTAAATATGCAACAGATAAGAAATCACAAGCTC
TTTACTTGGTACAGGATTCAATCAAGGGGCTGGATGCTTATGCTAAGGGAGAAAATAAAGATTTTTCTCAAGTTGGAATT
AAAGCCCTTGACGATCAAACAGTCCAATACACTTTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACAATGGGTGT
CTTGGCACCAGTTAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCTAAAGCGACAGATCCAAGCAGTATCTTGT
ATAATGGTCCTTATTTGTTAAAATCTCTTGTGGCTAAATCTTCCGTTGAATTTGCAAAAAACCCTAACTACTGGGATAAA
GATAATGTTCATGTTGATAAGATAAAATTGTCATTCTGGGATGGTCAAGATACCAGCAAACCTGCGGAAAACTTTAAAGA
TGGTAGTCTTACAGCAGCCAGACTTTATCCTACAAATGCAAGTTTTGCAGAACTTGAAAAAACGATGAAGGACAATATTG
TCTATACCCAACAAGACTCTACGACTTATCTAGTTGGTACAAATATTGACCGCCAGTCCTATAAATATACTTCTAAGACT
AGTGACGAACAAAAGACTTCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGCCAAGCTATTGCTTTTGGTTTGGATCG
TACTGCCTATGCTTCACAAGTGAACGGTGCCAGTGGTGCAAGCAAAATTTTGCGTAATCTCTTTGTGCCACCAACATTTG
TTCAAGCTGATGGGAAAAACTTTGGCGATATGGTCAAAGAAAAATTGGTGACTTACGGGGATGAATGGAAGGATGTTAAT
CTGGCCGATGCCCAAGATGGATTATATAATCCTGAAAAAGCCAAGGCAGAATTTGCCAAAGCTAAGTCCGCTCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCAGTTGACCAGACAGCAACTACAAAAGTTCAACGTGTACAGTCTT
TCAAACAATCGGTTGAAGAAACCTTGGGTACAGATAATGTCGTAATTGATATTCAACAACTACAAAAAGATGAAGTCTTG
AATATTACCTACTTTGCTGAAACAGCAGCTGGGGAAGATTGGGATATTTCAGATAATGTTGGTTGGTCTCCAGACTTTGC
GGATCCATCTACTTACCTCGATATTATCAAACCATCAGTTGGTGAAAACACTAAAACCTACTTTGGCTTTGATTCTGGTA
CAGATAATGCTGCAGCTAAGAAGGTTGGTCTGAACGACTATGAGAAATTGGTAACTGAAGCTGGAAATGAGACAATAGAT
GTAGCAAAACGTTATGATAAGTATGCTGCAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATTATTCCAACAACATCACT
CACTGGTCGCCCAATCTTGTCTAAGATGGTACCATTTACGATGCCGTTTGCCTTCTCTGGTAACAAGGGGACAAGCGATC
CGCTCCTATACAAATACTTGGAACTTCAAGACAAGGCAGTCACAGCAGATGAATATCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGAAGAATTCAATAAAAAAGCGCAAGAAGAACTTGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.394

100

0.595
  amiA Streptococcus salivarius strain HSISS4

59.242

100

0.593
  amiA3 Streptococcus thermophilus LMG 18311

58.788

100

0.589

Multiple sequence alignment