Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C9888_RS18585 Genome accession   NZ_CP028375
Coordinates   3686608..3687297 (-) Length   229 a.a.
NCBI ID   WP_111927758.1    Uniprot ID   -
Organism   Bacillus velezensis strain W1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3681608..3692297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS18550 - 3681806..3682288 (-) 483 WP_003151394.1 flagellar protein FlgN -
  C9888_RS18555 flgM 3682303..3682569 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C9888_RS18560 - 3682639..3683058 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  C9888_RS18565 comFC 3683132..3683821 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  C9888_RS18570 - 3683827..3684111 (-) 285 WP_014419011.1 competence protein ComFB -
  C9888_RS18575 comFA 3684169..3685554 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  C9888_RS18580 - 3685662..3686510 (-) 849 WP_003151387.1 DegV family protein -
  C9888_RS18585 degU 3686608..3687297 (-) 690 WP_111927758.1 two-component system response regulator DegU Regulator
  C9888_RS18590 degS 3687374..3688537 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C9888_RS18595 - 3688768..3689415 (+) 648 WP_007614107.1 YigZ family protein -
  C9888_RS18600 - 3689420..3690634 (+) 1215 WP_014419013.1 LCP family protein -
  C9888_RS18605 - 3690724..3691800 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25794.51 Da        Isoelectric Point: 6.1191

>NTDB_id=284476 C9888_RS18585 WP_111927758.1 3686608..3687297(-) (degU) [Bacillus velezensis strain W1]
MTKVNIVIIDDHQLFRGGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=284476 C9888_RS18585 WP_111927758.1 3686608..3687297(-) (degU) [Bacillus velezensis strain W1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGGGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment