Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C9888_RS18565 Genome accession   NZ_CP028375
Coordinates   3683132..3683821 (-) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain W1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678132..3688821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS18530 fliW 3678223..3678654 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  C9888_RS18535 - 3678684..3679253 (-) 570 WP_003151397.1 DUF6470 family protein -
  C9888_RS18540 flgL 3679344..3680261 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  C9888_RS18545 flgK 3680273..3681790 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  C9888_RS18550 - 3681806..3682288 (-) 483 WP_003151394.1 flagellar protein FlgN -
  C9888_RS18555 flgM 3682303..3682569 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C9888_RS18560 - 3682639..3683058 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  C9888_RS18565 comFC 3683132..3683821 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  C9888_RS18570 - 3683827..3684111 (-) 285 WP_014419011.1 competence protein ComFB -
  C9888_RS18575 comFA 3684169..3685554 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  C9888_RS18580 - 3685662..3686510 (-) 849 WP_003151387.1 DegV family protein -
  C9888_RS18585 degU 3686608..3687297 (-) 690 WP_111927758.1 two-component system response regulator DegU Regulator
  C9888_RS18590 degS 3687374..3688537 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=284474 C9888_RS18565 WP_197535984.1 3683132..3683821(-) (comFC) [Bacillus velezensis strain W1]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=284474 C9888_RS18565 WP_197535984.1 3683132..3683821(-) (comFC) [Bacillus velezensis strain W1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment