Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   EGX93_RS18095 Genome accession   NZ_CP033762
Coordinates   3501346..3501936 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain FDAARGOS_536     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3496346..3506936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS18080 (EGX93_18065) uhpT 3496986..3498377 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  EGX93_RS18085 (EGX93_18070) uhpC 3498515..3499834 (-) 1320 WP_001298006.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  EGX93_RS18090 (EGX93_18075) uhpB 3499844..3501346 (-) 1503 WP_001304997.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  EGX93_RS18095 (EGX93_18080) letA 3501346..3501936 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  EGX93_RS18105 (EGX93_18090) - 3502351..3503211 (+) 861 WP_001259006.1 DUF6708 domain-containing protein -
  EGX93_RS18110 (EGX93_18095) ilvN 3503402..3503692 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  EGX93_RS18115 (EGX93_18100) ilvB 3503696..3505384 (-) 1689 WP_000168476.1 acetolactate synthase large subunit -
  EGX93_RS18120 (EGX93_18105) ivbL 3505490..3505588 (-) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  EGX93_RS25870 ysdE 3505833..3505907 (-) 75 WP_211180519.1 protein YsdE -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=284450 EGX93_RS18095 WP_000633668.1 3501346..3501936(-) (letA) [Escherichia coli strain FDAARGOS_536]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=284450 EGX93_RS18095 WP_000633668.1 3501346..3501936(-) (letA) [Escherichia coli strain FDAARGOS_536]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTTCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGCGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCGCCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGTTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment