Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   EGV93_RS30890 Genome accession   NZ_CP033686
Coordinates   6454557..6456632 (+) Length   691 a.a.
NCBI ID   WP_031686235.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H25883     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6449557..6461632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGV93_RS30860 (EGV93_30765) - 6449979..6450359 (+) 381 WP_003096609.1 RidA family protein -
  EGV93_RS30865 (EGV93_30770) - 6450414..6451145 (+) 732 WP_003096611.1 hypothetical protein -
  EGV93_RS30870 (EGV93_30775) - 6451152..6451772 (-) 621 WP_003096613.1 LysE family translocator -
  EGV93_RS30875 (EGV93_30780) - 6451839..6452639 (-) 801 WP_003096615.1 AraC family transcriptional regulator -
  EGV93_RS30880 (EGV93_30785) - 6452639..6453490 (-) 852 WP_003096618.1 SDR family oxidoreductase -
  EGV93_RS30885 (EGV93_30790) oxyR 6453628..6454560 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  EGV93_RS30890 (EGV93_30795) recG 6454557..6456632 (+) 2076 WP_031686235.1 ATP-dependent DNA helicase RecG Machinery gene
  EGV93_RS30895 (EGV93_30800) - 6456722..6458131 (+) 1410 WP_003136268.1 HDOD domain-containing protein -
  EGV93_RS30900 (EGV93_30805) - 6458203..6458595 (-) 393 WP_003096629.1 hypothetical protein -
  EGV93_RS30905 (EGV93_30810) - 6458731..6459003 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  EGV93_RS30915 (EGV93_30820) alkT 6459205..6460359 (-) 1155 WP_003114369.1 rubredoxin-NAD(+) reductase AlkT -
  EGV93_RS30920 (EGV93_30825) - 6460411..6460578 (-) 168 WP_003098329.1 rubredoxin -
  EGV93_RS30925 (EGV93_30830) - 6460762..6460929 (-) 168 WP_003098330.1 rubredoxin -
  EGV93_RS30930 (EGV93_30835) - 6461063..6461464 (-) 402 WP_003096637.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76106.81 Da        Isoelectric Point: 7.4218

>NTDB_id=284387 EGV93_RS30890 WP_031686235.1 6454557..6456632(+) (recG) [Pseudomonas aeruginosa strain H25883]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAGGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=284387 EGV93_RS30890 WP_031686235.1 6454557..6456632(+) (recG) [Pseudomonas aeruginosa strain H25883]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGCGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAAGGACTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGGAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCAACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTAA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

RecG wedge domain (RecG_wedge)

(12-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG Bacillus subtilis subsp. subtilis str. 168

40.208

97.54

0.392
  recG/mmsA Streptococcus pneumoniae R6

40.569

96.671

0.392
  recG/mmsA Streptococcus pneumoniae R36A

40.569

96.671

0.392

Multiple sequence alignment