Detailed information NTG0028421

Bioinformatically predicted

Overview

• Name: epdK
• Type: Machinery gene
• Locus tag: MEVAN_RS05385
• Genome accession: NC_009634
• Coordinates: 1072558..1073613 (-)
• Length: 351 a.a.
• NCBI ID: WP_012065868.1
• Uniprot ID: -
• Organism: Methanococcus vannielii SB
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1067558..1078613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MEVAN_RS05365 (Mevan_1049)	epdL	1068220..1069881 (-)	1662	WP_012065869.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
MEVAN_RS05370 (Mevan_1050)	-	1069898..1070917 (-)	1020	WP_012065870.1	transcription initiation factor IIB	-
MEVAN_RS05375 (Mevan_1051)	-	1070936..1071205 (-)	270	WP_012065871.1	H/ACA RNA-protein complex protein Gar1	-
MEVAN_RS08920 (Mevan_1052)	-	1071692..1072024 (+)	333	Protein_1067	type 2 isopentenyl-diphosphate Delta-isomerase	-
MEVAN_RS05380 (Mevan_1053)	-	1072026..1072553 (-)	528	Protein_1068	type II secretion system F family protein	-
MEVAN_RS05385 (Mevan_1054)	epdK	1072558..1073613 (-)	1056	WP_012065868.1	type II secretion system F family protein	Machinery gene
MEVAN_RS05390 (Mevan_1055)	epdL	1073625..1075286 (-)	1662	WP_012065869.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
MEVAN_RS05395 (Mevan_1056)	-	1075303..1076322 (-)	1020	WP_012065870.1	transcription initiation factor IIB	-
MEVAN_RS05400 (Mevan_1057)	-	1076341..1076610 (-)	270	WP_012065871.1	H/ACA RNA-protein complex protein Gar1	-
MEVAN_RS05405 (Mevan_1058)	fni	1077097..1078167 (+)	1071	WP_012065873.1	type 2 isopentenyl-diphosphate Delta-isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39878.74 Da
• Isoelectric Point: 9.6630

>NTDB_id=28421 MEVAN_RS05385 WP_012065868.1 1072558..1073613(-) (epdK) [Methanococcus vannielii SB]
MNVRRKKEPSFLDKLSNLLKSTKITKRKNVSRVGRSEYLKKIFDRKKETFTEDEILEFYEPYINETPEVTIDIDDILFEK
RFGALQGYSDSFSYWVTNTSFLPSKRDYQYAGIIDERVYFLKIIVFSIFAVILLFLYGVITSDPISGITNGIIFALIILF
GGIFYPKLKLTLFRGEIKIQVLMSILHLISMLNSGASVQEAIKNIANNPEYGLTSYEFRSIIKDINQGGYNFVEALERAK
VRSKIPLLKKLYDQLILAANKGGTQLLLENLYNEIVRESLSKIDSSKFQISNLGNLIFGIGLIIPFSGMIQSALGAQQGF
DGIINAIDLVMTKIGLLSTIIFTIFIKMKIE

Nucleotide

• Length: 1056 bp

>NTDB_id=28421 MEVAN_RS05385 WP_012065868.1 1072558..1073613(-) (epdK) [Methanococcus vannielii SB]
ATGAATGTAAGACGTAAAAAAGAACCGAGTTTTTTAGATAAACTGTCGAATTTATTAAAAAGTACTAAAATTACGAAACG
GAAAAATGTTTCAAGGGTTGGAAGGTCAGAATACTTAAAAAAAATATTTGATAGAAAAAAAGAAACATTTACGGAAGACG
AAATTTTAGAATTTTATGAACCATACATTAATGAAACTCCAGAAGTAACTATTGATATAGACGATATTTTATTTGAAAAG
CGTTTTGGCGCATTACAAGGTTATTCGGATTCTTTTTCGTATTGGGTTACAAATACATCATTTTTGCCATCAAAAAGAGA
TTACCAGTATGCTGGAATTATTGATGAACGTGTTTATTTTTTAAAAATAATTGTTTTTTCAATATTTGCGGTTATTTTAC
TTTTTTTATATGGAGTAATTACTTCTGATCCCATATCTGGAATTACTAATGGAATTATTTTTGCATTAATTATCCTATTT
GGAGGAATATTTTATCCAAAATTAAAACTTACACTATTTAGGGGAGAAATAAAGATTCAAGTGTTAATGAGTATATTACA
CCTTATATCAATGCTGAATTCCGGAGCGTCAGTCCAAGAAGCTATTAAAAATATTGCAAATAATCCAGAATACGGTTTAA
CCTCTTACGAATTTAGGAGCATTATAAAAGATATTAATCAAGGAGGATATAACTTTGTAGAAGCACTAGAACGGGCAAAA
GTAAGGTCAAAAATACCTCTTCTAAAAAAACTTTATGATCAATTAATTCTTGCTGCAAATAAAGGTGGAACCCAGTTATT
ACTTGAAAACCTGTATAATGAAATAGTAAGGGAATCACTATCCAAAATTGATTCTTCAAAGTTTCAAATTTCAAATTTAG
GTAATTTAATATTTGGTATAGGCCTTATTATACCATTTTCAGGTATGATACAGTCTGCATTAGGGGCTCAGCAGGGTTTT
GATGGAATTATTAATGCTATTGACTTAGTAATGACTAAAATAGGGCTTTTATCTACCATAATTTTTACAATATTTATTAA
AATGAAAATAGAGTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (186-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
epdK	Methanococcus maripaludis strain DSM 2067	79.261	100	0.795