Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MEVAN_RS05390 Genome accession   NC_009634
Coordinates   1073625..1075286 (-) Length   553 a.a.
NCBI ID   WP_012065869.1    Uniprot ID   A6UR18
Organism   Methanococcus vannielii SB     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1068625..1080286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEVAN_RS05370 (Mevan_1050) - 1069898..1070917 (-) 1020 WP_012065870.1 transcription initiation factor IIB -
  MEVAN_RS05375 (Mevan_1051) - 1070936..1071205 (-) 270 WP_012065871.1 H/ACA RNA-protein complex protein Gar1 -
  MEVAN_RS08920 (Mevan_1052) - 1071692..1072024 (+) 333 Protein_1067 type 2 isopentenyl-diphosphate Delta-isomerase -
  MEVAN_RS05380 (Mevan_1053) - 1072026..1072553 (-) 528 Protein_1068 type II secretion system F family protein -
  MEVAN_RS05385 (Mevan_1054) epdK 1072558..1073613 (-) 1056 WP_012065868.1 type II secretion system F family protein Machinery gene
  MEVAN_RS05390 (Mevan_1055) epdL 1073625..1075286 (-) 1662 WP_012065869.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MEVAN_RS05395 (Mevan_1056) - 1075303..1076322 (-) 1020 WP_012065870.1 transcription initiation factor IIB -
  MEVAN_RS05400 (Mevan_1057) - 1076341..1076610 (-) 270 WP_012065871.1 H/ACA RNA-protein complex protein Gar1 -
  MEVAN_RS05405 (Mevan_1058) fni 1077097..1078167 (+) 1071 WP_012065873.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  MEVAN_RS05410 (Mevan_1059) - 1078292..1079638 (+) 1347 WP_012065874.1 RNase J family beta-CASP ribonuclease -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62413.59 Da        Isoelectric Point: 6.3086

>NTDB_id=28422 MEVAN_RS05390 WP_012065869.1 1073625..1075286(-) (epdL) [Methanococcus vannielii SB]
MGLFDRIQKSDKPAIAKKDLAESNINTPNIYENKENSLEDTKQEPPKKVGFSISRDIKKQEIENFTSDSRSTILDKYFVR
VDEIDFDIIIEKEEGVTKYKIPEITLMNTALSKFSELDIKTIKAELSESSLQKLGQIQGYLKSFSEKNNLHLRDIEILHL
SHYFYLIIGKLGLLEIPLNDDSLEELMVNGIDSPAYVFHRKYQMCETNIRSDRHEATRVVESIAYLAGRTIDSRTPLLDA
FLPDGSRVNATMQDVTLRGSTITIRKFSADPLTIVDLIRYGTFDLELASFLWQAVEGYFGSKPANTLIVGGTGSGKTTTL
NVVSMFSMYNDRIITVEDTPELQVPLNHVIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAM
NTGHDGCSGTLHANSADEAIIRLINHPMSVPKVMLSSVDFIINQQRIKRNKKTIRRILGVVEIGGSGENITKTELFKYDG
VSDSVVKTGICMWEEEVCAIAGITRDELMDDRINRKKVLKYMVNNNINGIKKVGDVIKQYQENPENVLKHILE

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=28422 MEVAN_RS05390 WP_012065869.1 1073625..1075286(-) (epdL) [Methanococcus vannielii SB]
ATGGGACTGTTTGATAGGATTCAAAAATCCGATAAACCAGCTATTGCTAAAAAAGATTTAGCTGAAAGTAATATAAACAC
CCCAAATATTTACGAAAATAAAGAAAATAGTTTAGAAGACACAAAACAGGAACCTCCCAAAAAAGTTGGTTTTTCGATAT
CCCGCGATATAAAAAAACAAGAAATAGAAAATTTTACTAGTGATTCAAGGTCCACTATTTTAGATAAGTATTTTGTAAGA
GTTGATGAAATCGATTTTGATATTATTATCGAAAAAGAAGAAGGAGTTACAAAGTATAAAATACCCGAAATTACATTAAT
GAACACCGCCCTTTCAAAATTCTCTGAACTGGATATAAAGACTATTAAAGCAGAATTATCAGAATCATCACTACAGAAAT
TAGGGCAAATTCAAGGATATTTAAAAAGTTTTTCAGAAAAAAATAACTTACATTTAAGGGATATTGAAATACTTCATTTA
TCGCACTATTTTTACTTAATTATTGGAAAACTTGGACTTTTAGAAATTCCACTAAATGATGATAGTCTAGAAGAATTAAT
GGTAAATGGAATTGATTCTCCAGCATATGTATTCCATAGAAAATACCAAATGTGTGAAACAAACATACGTTCAGATCGCC
ACGAAGCAACAAGAGTTGTTGAAAGTATTGCATACCTTGCAGGAAGAACTATTGATTCTAGAACGCCATTACTTGACGCT
TTTTTACCTGATGGAAGTAGAGTAAATGCAACAATGCAAGATGTAACTCTTAGGGGGAGTACAATTACAATTCGTAAATT
TAGTGCAGACCCCTTAACAATTGTTGATTTAATAAGATATGGAACTTTTGATTTAGAACTTGCATCTTTCCTTTGGCAGG
CTGTTGAAGGATATTTTGGTTCAAAACCAGCAAATACCTTAATTGTTGGTGGTACAGGTTCAGGTAAGACTACAACATTA
AACGTTGTTTCAATGTTTTCAATGTATAACGATAGAATTATCACTGTTGAAGATACGCCAGAGTTGCAAGTACCGTTAAA
TCACGTTATAAAAATGATTACAAGGCCCGGAAGACCTGGAATTCAAGGTTATGAAATTACAATGGATGATTTAATTAAAA
ACTCACTTAGAATGAGGCCAGACCGGATTTTTGTAGGGGAAGTAAGGGGTAGTGAAGCCCACTCTCTGTTGGTTGCAATG
AATACTGGACATGATGGTTGTTCAGGGACTTTACACGCAAACAGTGCAGATGAAGCAATAATAAGACTTATTAACCACCC
GATGAGTGTTCCAAAGGTTATGCTTTCTTCAGTTGATTTTATTATAAACCAGCAACGAATTAAGAGAAATAAGAAAACCA
TAAGAAGAATTTTAGGGGTTGTTGAAATTGGCGGAAGTGGTGAAAATATTACCAAAACCGAGTTATTTAAGTACGACGGT
GTAAGTGACAGTGTTGTAAAAACGGGAATTTGTATGTGGGAAGAAGAAGTCTGTGCAATTGCAGGAATTACAAGGGATGA
ATTAATGGATGATCGAATAAATAGAAAAAAAGTATTAAAGTATATGGTAAATAACAATATTAACGGAATTAAAAAGGTAG
GGGATGTAATTAAACAGTATCAAGAAAACCCAGAAAATGTTTTAAAGCATATACTGGAGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(180-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UR18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

84.144

100

0.844

Multiple sequence alignment