Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   MEVAN_RS05050 Genome accession   NC_009634
Coordinates   1004105..1004338 (-) Length   77 a.a.
NCBI ID   WP_012065819.1    Uniprot ID   A6UQW8
Organism   Methanococcus vannielii SB     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 999105..1009338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEVAN_RS05025 (Mevan_0982) recJ 999196..1000599 (-) 1404 WP_012065814.1 single-stranded-DNA-specific exonuclease RecJ -
  MEVAN_RS05030 (Mevan_0983) - 1000693..1001328 (+) 636 WP_012065815.1 hypothetical protein -
  MEVAN_RS05035 (Mevan_0984) - 1001334..1002014 (-) 681 WP_012065816.1 metallophosphoesterase -
  MEVAN_RS05040 (Mevan_0985) MMJJ_RS05685 1002036..1002260 (-) 225 WP_012065817.1 class III signal peptide-containing protein Machinery gene
  MEVAN_RS05045 (Mevan_0986) - 1002295..1004076 (-) 1782 WP_012065818.1 DUF6541 family protein -
  MEVAN_RS05050 (Mevan_0987) MMJJ_RS05685 1004105..1004338 (-) 234 WP_012065819.1 class III signal peptide-containing protein Machinery gene
  MEVAN_RS05055 - 1004679..1004900 (+) 222 WP_232179323.1 AtpZ/AtpI family protein -
  MEVAN_RS05060 (Mevan_0988) - 1004910..1005989 (+) 1080 WP_012065820.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 -
  MEVAN_RS05065 (Mevan_0989) - 1006027..1006233 (+) 207 WP_012065821.1 ferredoxin family protein -
  MEVAN_RS05070 (Mevan_0990) - 1006259..1006939 (+) 681 WP_012065822.1 hypothetical protein -
  MEVAN_RS05075 (Mevan_0991) comE 1006957..1007523 (-) 567 WP_012065823.1 sulfopyruvate decarboxylase subunit beta -
  MEVAN_RS05080 (Mevan_0992) - 1007525..1008193 (-) 669 WP_012065824.1 HisA/HisF family protein -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8026.17 Da        Isoelectric Point: 8.5475

>NTDB_id=28411 MEVAN_RS05050 WP_012065819.1 1004105..1004338(-) (MMJJ_RS05685) [Methanococcus vannielii SB]
MKFLEKLSSNKGQVSMEIGILVAAAVAVAAIAAYFYAKNVRESQVDTGQQASSTTSTLTDIAGKATGNLTNIITFTP

Nucleotide


Download         Length: 234 bp        

>NTDB_id=28411 MEVAN_RS05050 WP_012065819.1 1004105..1004338(-) (MMJJ_RS05685) [Methanococcus vannielii SB]
ATGAAATTTTTAGAAAAACTCTCCTCAAATAAAGGTCAGGTTTCAATGGAAATCGGTATCTTAGTTGCAGCAGCAGTAGC
AGTTGCAGCAATTGCAGCATACTTTTATGCGAAAAATGTTAGGGAATCACAAGTTGACACAGGTCAACAAGCTAGTAGTA
CAACAAGTACTTTAACGGATATTGCAGGAAAGGCAACAGGTAATTTAACTAATATTATTACCTTTACACCTTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UQW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

72.222

93.506

0.675
  epdE Methanococcus maripaludis strain DSM 2067

56.757

96.104

0.545

Multiple sequence alignment