Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PGN_RS06625 Genome accession   NC_010729
Coordinates   1545617..1546240 (-) Length   207 a.a.
NCBI ID   WP_012458238.1    Uniprot ID   B2RKL4
Organism   Porphyromonas gingivalis ATCC 33277     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540617..1551240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN_RS10620 (PGN_1385) - 1540884..1541057 (+) 174 WP_230456085.1 hypothetical protein -
  PGN_RS10625 (PGN_1386) - 1541294..1541569 (+) 276 WP_231845233.1 hypothetical protein -
  PGN_RS06610 (PGN_1387) - 1541838..1543073 (-) 1236 WP_012458235.1 ABC transporter permease -
  PGN_RS06615 (PGN_1388) ligA 1543086..1545095 (-) 2010 WP_012458236.1 NAD-dependent DNA ligase LigA -
  PGN_RS06620 (PGN_1389) - 1545083..1545610 (-) 528 WP_012458237.1 GNAT family N-acetyltransferase -
  PGN_RS06625 (PGN_1390) recR 1545617..1546240 (-) 624 WP_012458238.1 recombination mediator RecR Machinery gene
  PGN_RS06630 (PGN_1391) - 1546237..1547751 (-) 1515 WP_004584583.1 Rne/Rng family ribonuclease -
  PGN_RS06635 (PGN_1393) - 1548072..1548350 (-) 279 WP_004584585.1 HU family DNA-binding protein -
  PGN_RS06640 (PGN_1394) - 1548462..1549592 (-) 1131 WP_012458240.1 ISAs1-like element ISPg2 family transposase -
  PGN_RS06645 (PGN_1395) nrdG 1549744..1550235 (-) 492 WP_080504445.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23017.34 Da        Isoelectric Point: 6.0053

>NTDB_id=28410 PGN_RS06625 WP_012458238.1 1545617..1546240(-) (recR) [Porphyromonas gingivalis ATCC 33277]
MIQKYPSRLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTRQFAAALVDLREHISYCRRCHNISDSGVCTICADPTR
DQSTLCVVENIRDVMAIENTSQYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIHEVILALSTTMEGDTTNFFLF
RKLESTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=28410 PGN_RS06625 WP_012458238.1 1545617..1546240(-) (recR) [Porphyromonas gingivalis ATCC 33277]
ATGATACAGAAATATCCTTCGCGTCTGCTTGAGAAGGCGATAGACCAATTTGCTACATTGCCGGGTGTAGGGCGCAAGAC
AGCCCTGCGCCTGGCTTTGTACTTATTGCGCCAACCTGTGGAAAATACCCGTCAATTTGCAGCAGCCCTTGTAGATCTTC
GGGAACATATTTCCTATTGCAGGCGCTGTCATAATATCAGTGATTCCGGTGTTTGTACTATCTGTGCAGACCCCACTCGG
GATCAGAGTACACTCTGCGTAGTAGAGAATATCCGTGACGTTATGGCTATCGAGAATACCTCACAGTATCGAGGCTTGTA
TCATGTACTCGGTGGAGTCATATCTCCCATGGATGGGATCGGCCCGGGCGATTTGCAAATAGATTCTTTGGTGCATCGAG
TAGCTTCTGAGCAGATTCATGAGGTTATATTGGCTTTGAGTACGACGATGGAGGGCGATACTACCAACTTTTTCCTCTTT
CGCAAGTTGGAGTCTACCGGCGTTCGGGTCAGTGTAATTGCTCGAGGCATTGCTATAGGCGATGAGATCGAATATGCCGA
TGAGATTACCCTCGGTCGTTCTATTCTCAATCGTACCGATTTCTCCGACTCAGTCAAATTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(43-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RKL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

96.135

0.464
  recR Streptococcus pneumoniae R6

45.685

95.169

0.435
  recR Bacillus subtilis subsp. subtilis str. 168

43.434

95.652

0.415

Multiple sequence alignment