Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | C9I28_RS05500 | Genome accession | NZ_CP028324 |
| Coordinates | 1251949..1253379 (+) | Length | 476 a.a. |
| NCBI ID | WP_107140590.1 | Uniprot ID | A0A2R4C6S1 |
| Organism | Pseudoduganella armeniaca strain ZMN-3 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1246949..1258379
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9I28_RS05475 (C9I28_05475) | - | 1247364..1248185 (+) | 822 | WP_107140585.1 | ABC transporter permease | - |
| C9I28_RS05480 (C9I28_05480) | - | 1248187..1248984 (+) | 798 | WP_107140586.1 | ABC transporter ATP-binding protein | - |
| C9I28_RS05485 (C9I28_05485) | - | 1249162..1249965 (+) | 804 | WP_107140587.1 | inner membrane protein YpjD | - |
| C9I28_RS05490 (C9I28_05490) | - | 1249962..1250219 (+) | 258 | WP_107140588.1 | PP0621 family protein | - |
| C9I28_RS05495 (C9I28_05495) | - | 1250235..1251923 (+) | 1689 | WP_229415917.1 | PAS domain-containing sensor histidine kinase | - |
| C9I28_RS05500 (C9I28_05500) | pilR | 1251949..1253379 (+) | 1431 | WP_107140590.1 | sigma-54 dependent transcriptional regulator | Regulator |
| C9I28_RS05505 (C9I28_05505) | - | 1253860..1256805 (+) | 2946 | WP_107140591.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| C9I28_RS05510 (C9I28_05510) | - | 1257011..1258123 (+) | 1113 | WP_107140592.1 | ribonucleotide-diphosphate reductase subunit beta | - |
Sequence
Protein
Download Length: 476 a.a. Molecular weight: 51208.93 Da Isoelectric Point: 5.1568
>NTDB_id=284103 C9I28_RS05500 WP_107140590.1 1251949..1253379(+) (pilR) [Pseudoduganella armeniaca strain ZMN-3]
MSSPRVLVVDDEEDLRELLEITLLKMGLDVDSAPDLGRARAHLAGGADYGLVLTDMRLPDGLGLELVREVAASGRNTPIA
VVTAFGSTDNAVVALKAGAFDYVTKPVQLDQLRQLVQSALKLNGPAPLARGEAVDSRLKGHSAAMQALRAQIARLARSMA
PIAITGESGSGKELAAREIHAQSSRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAAHGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGKFRQDLFYRLNVIELALPPLRERLDDLPVLT
EAILARLAAGGAPAVLGPGVLEALRGYSFPGNVRELENVLERALAFANDGVIHVEDLALKGARLLEAGQPEPVSASPTAP
VAPLPVPLDEAPAGMPPLPDLTVLPSNLPEYLERVEREIIVRALAQTQYNRTQAAQLLGISFRQLRYQMQKLNIKE
MSSPRVLVVDDEEDLRELLEITLLKMGLDVDSAPDLGRARAHLAGGADYGLVLTDMRLPDGLGLELVREVAASGRNTPIA
VVTAFGSTDNAVVALKAGAFDYVTKPVQLDQLRQLVQSALKLNGPAPLARGEAVDSRLKGHSAAMQALRAQIARLARSMA
PIAITGESGSGKELAAREIHAQSSRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAAHGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGKFRQDLFYRLNVIELALPPLRERLDDLPVLT
EAILARLAAGGAPAVLGPGVLEALRGYSFPGNVRELENVLERALAFANDGVIHVEDLALKGARLLEAGQPEPVSASPTAP
VAPLPVPLDEAPAGMPPLPDLTVLPSNLPEYLERVEREIIVRALAQTQYNRTQAAQLLGISFRQLRYQMQKLNIKE
Nucleotide
Download Length: 1431 bp
>NTDB_id=284103 C9I28_RS05500 WP_107140590.1 1251949..1253379(+) (pilR) [Pseudoduganella armeniaca strain ZMN-3]
ATGAGTTCACCCCGGGTATTGGTCGTCGACGACGAAGAGGACCTGCGCGAACTGCTGGAAATCACGCTGCTGAAGATGGG
ACTGGACGTCGACAGCGCGCCGGACCTCGGCCGCGCCCGCGCCCACCTGGCCGGCGGCGCCGACTACGGCCTGGTGCTGA
CGGACATGCGCCTGCCCGACGGCCTGGGGCTGGAACTGGTGCGCGAGGTCGCCGCCAGCGGGCGCAATACGCCGATCGCC
GTCGTCACCGCCTTCGGCAGCACGGACAATGCCGTCGTCGCGCTCAAGGCCGGCGCCTTCGACTACGTGACGAAGCCGGT
GCAGCTGGATCAATTGCGCCAGCTGGTGCAGTCGGCGCTGAAACTGAACGGGCCGGCGCCGCTGGCGCGCGGCGAGGCGG
TGGACAGCCGCCTGAAGGGACATTCGGCCGCCATGCAGGCGCTGCGGGCGCAGATCGCGCGGCTGGCGCGCTCGATGGCG
CCGATCGCCATCACGGGCGAATCGGGCAGCGGCAAGGAGCTGGCGGCGCGCGAGATTCACGCCCAGAGCTCACGCGCGGA
CAAGCCGTTCGTGGCGGTCAATTGCGGCGCGATTCCCGAGGCGCTGATGGAGGCCGAGTTCTTCGGCTACCGCAAGGGCG
CGTTCACGGGCGCGGCGGACGAGCGCGATGGCTTCTTCCAGGCCGCCCACGGCGGCACCCTGATGCTGGACGAGGTGGCG
GATTTACCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACCGCCGA
GGAGCCGGTGGACGTGCGCATCGTCAGCGCCACCCACCAGGACCTGGCGCGCTGCGTCGAGCAGGGCAAGTTCCGGCAGG
ACCTGTTTTACCGCCTGAACGTCATCGAGCTGGCGCTGCCGCCGCTGCGCGAGCGGCTCGACGATCTGCCGGTGCTGACC
GAGGCGATCCTGGCGCGCCTGGCGGCGGGCGGCGCGCCGGCCGTGCTGGGCCCGGGCGTGCTGGAGGCACTGCGCGGCTA
CAGCTTCCCCGGTAACGTGCGCGAGCTGGAAAACGTGCTGGAACGGGCGCTGGCGTTCGCCAACGACGGCGTGATCCACG
TCGAGGACCTGGCGTTGAAGGGCGCACGGCTGCTCGAAGCGGGTCAGCCTGAACCGGTGTCGGCGTCGCCAACCGCCCCG
GTCGCGCCGCTGCCGGTGCCGCTGGACGAGGCGCCGGCCGGCATGCCGCCGCTGCCGGATCTGACGGTGTTGCCGTCCAA
CCTGCCGGAATACCTGGAGCGGGTCGAGCGCGAGATCATCGTGCGTGCGCTGGCGCAGACCCAGTACAACCGCACCCAGG
CCGCCCAGCTGCTGGGCATCAGTTTCCGGCAGCTGCGCTATCAGATGCAAAAACTGAACATCAAGGAATGA
ATGAGTTCACCCCGGGTATTGGTCGTCGACGACGAAGAGGACCTGCGCGAACTGCTGGAAATCACGCTGCTGAAGATGGG
ACTGGACGTCGACAGCGCGCCGGACCTCGGCCGCGCCCGCGCCCACCTGGCCGGCGGCGCCGACTACGGCCTGGTGCTGA
CGGACATGCGCCTGCCCGACGGCCTGGGGCTGGAACTGGTGCGCGAGGTCGCCGCCAGCGGGCGCAATACGCCGATCGCC
GTCGTCACCGCCTTCGGCAGCACGGACAATGCCGTCGTCGCGCTCAAGGCCGGCGCCTTCGACTACGTGACGAAGCCGGT
GCAGCTGGATCAATTGCGCCAGCTGGTGCAGTCGGCGCTGAAACTGAACGGGCCGGCGCCGCTGGCGCGCGGCGAGGCGG
TGGACAGCCGCCTGAAGGGACATTCGGCCGCCATGCAGGCGCTGCGGGCGCAGATCGCGCGGCTGGCGCGCTCGATGGCG
CCGATCGCCATCACGGGCGAATCGGGCAGCGGCAAGGAGCTGGCGGCGCGCGAGATTCACGCCCAGAGCTCACGCGCGGA
CAAGCCGTTCGTGGCGGTCAATTGCGGCGCGATTCCCGAGGCGCTGATGGAGGCCGAGTTCTTCGGCTACCGCAAGGGCG
CGTTCACGGGCGCGGCGGACGAGCGCGATGGCTTCTTCCAGGCCGCCCACGGCGGCACCCTGATGCTGGACGAGGTGGCG
GATTTACCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACCGCCGA
GGAGCCGGTGGACGTGCGCATCGTCAGCGCCACCCACCAGGACCTGGCGCGCTGCGTCGAGCAGGGCAAGTTCCGGCAGG
ACCTGTTTTACCGCCTGAACGTCATCGAGCTGGCGCTGCCGCCGCTGCGCGAGCGGCTCGACGATCTGCCGGTGCTGACC
GAGGCGATCCTGGCGCGCCTGGCGGCGGGCGGCGCGCCGGCCGTGCTGGGCCCGGGCGTGCTGGAGGCACTGCGCGGCTA
CAGCTTCCCCGGTAACGTGCGCGAGCTGGAAAACGTGCTGGAACGGGCGCTGGCGTTCGCCAACGACGGCGTGATCCACG
TCGAGGACCTGGCGTTGAAGGGCGCACGGCTGCTCGAAGCGGGTCAGCCTGAACCGGTGTCGGCGTCGCCAACCGCCCCG
GTCGCGCCGCTGCCGGTGCCGCTGGACGAGGCGCCGGCCGGCATGCCGCCGCTGCCGGATCTGACGGTGTTGCCGTCCAA
CCTGCCGGAATACCTGGAGCGGGTCGAGCGCGAGATCATCGTGCGTGCGCTGGCGCAGACCCAGTACAACCGCACCCAGG
CCGCCCAGCTGCTGGGCATCAGTTTCCGGCAGCTGCGCTATCAGATGCAAAAACTGAACATCAAGGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
53.992 |
100 |
0.54 |
| pilR | Acinetobacter baumannii strain A118 |
44.444 |
100 |
0.445 |