Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AMET_RS23355 Genome accession   NC_009633
Coordinates   4803356..4803859 (-) Length   167 a.a.
NCBI ID   WP_198135472.1    Uniprot ID   -
Organism   Alkaliphilus metalliredigens QYMF     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4798356..4808859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMET_RS23335 (Amet_4670) - 4799110..4799964 (-) 855 WP_012065628.1 ABC transporter ATP-binding protein -
  AMET_RS23340 (Amet_4671) - 4800037..4800666 (-) 630 WP_012065629.1 TetR/AcrR family transcriptional regulator -
  AMET_RS23345 (Amet_4672) - 4800933..4802747 (-) 1815 WP_012065630.1 MutS family DNA mismatch repair protein -
  AMET_RS23350 (Amet_4673) - 4802978..4803337 (-) 360 WP_049765321.1 ABC transporter substrate-binding protein -
  AMET_RS23355 (Amet_4674) ceuB 4803356..4803859 (-) 504 WP_198135472.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  AMET_RS23360 (Amet_4675) - 4803946..4804539 (+) 594 WP_049765322.1 helix-turn-helix transcriptional regulator -
  AMET_RS26090 - 4804864..4805031 (-) 168 WP_157047340.1 hypothetical protein -
  AMET_RS23365 (Amet_4676) - 4805679..4806068 (-) 390 WP_012065632.1 hypothetical protein -
  AMET_RS24655 (Amet_4677) - 4806151..4807011 (-) 861 WP_012065633.1 DUF6973 domain-containing protein -
  AMET_RS23375 (Amet_4679) - 4807499..4807879 (+) 381 WP_012065635.1 SHOCT domain-containing protein -
  AMET_RS23385 (Amet_4680) - 4808305..4808643 (-) 339 WP_012065636.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18496.17 Da        Isoelectric Point: 9.1883

>NTDB_id=28402 AMET_RS23355 WP_198135472.1 4803356..4803859(-) (ceuB) [Alkaliphilus metalliredigens QYMF]
MTTFFAYRYDLVQNISSWMQGNFSLVIKGRYELLYLSIPLVIIAFLYANKFTVAGMGEDFSANLGLNYNQVVNIGITIVA
LLSSLVVITVGRIPFLGLIIPNIVTIYQGDYLKKNILTTALLGAAFLLACDILGRLIIFPYEIPIGLMVGVIGSVIFLYL
LMRRNAS

Nucleotide


Download         Length: 504 bp        

>NTDB_id=28402 AMET_RS23355 WP_198135472.1 4803356..4803859(-) (ceuB) [Alkaliphilus metalliredigens QYMF]
ATTACAACATTTTTTGCCTATCGGTATGATTTGGTCCAAAACATTTCGTCCTGGATGCAGGGGAACTTTTCACTGGTGAT
TAAAGGGAGGTATGAGCTTTTATACTTAAGTATTCCACTGGTGATCATTGCCTTCCTATATGCCAACAAGTTTACTGTGG
CTGGTATGGGTGAGGATTTTTCCGCGAACCTAGGGCTCAATTACAATCAAGTTGTGAATATAGGTATTACCATTGTGGCT
TTACTCTCTTCTTTGGTTGTCATTACCGTAGGGAGAATCCCTTTTTTAGGTTTGATTATACCTAATATCGTTACCATTTA
TCAGGGGGACTATCTAAAAAAGAATATTTTAACAACAGCTTTATTGGGAGCAGCATTCCTTTTGGCCTGCGATATACTAG
GACGTTTGATTATTTTTCCCTATGAGATTCCAATAGGATTGATGGTTGGCGTAATAGGAAGCGTTATCTTTCTTTATTTG
TTAATGAGGAGGAATGCATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(2-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.614

99.401

0.533

Multiple sequence alignment