Detailed information NTG0028402

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: PGN_RS03975
• Genome accession: NC_010729
• Coordinates: 924187..924795 (-)
• Length: 202 a.a.
• NCBI ID: WP_012457812.1
• Uniprot ID: B2RJ07
• Organism: Porphyromonas gingivalis ATCC 33277
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 919187..929795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGN_RS03975 (PGN_0833)	ruvA	924187..924795 (-)	609	WP_012457812.1	Holliday junction branch migration protein RuvA	Machinery gene
PGN_RS03980 (PGN_0834)	-	925239..926324 (-)	1086	WP_012457813.1	IS5 family transposase	-
PGN_RS11475 (PGN_0835)	-	926428..926592 (-)	165	WP_012457814.1	hypothetical protein	-
PGN_RS03985 (PGN_0836)	-	926879..929554 (-)	2676	WP_012457815.1	carboxypeptidase-like regulatory domain-containing protein	-

Sequence

Protein

• Length: 202 a.a.
• Molecular weight: 21484.90 Da
• Isoelectric Point: 5.9635

>NTDB_id=28402 PGN_RS03975 WP_012457812.1 924187..924795(-) (ruvA) [Porphyromonas gingivalis ATCC 33277]
MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGV
GPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEE
AISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML

Nucleotide

• Length: 609 bp

>NTDB_id=28402 PGN_RS03975 WP_012457812.1 924187..924795(-) (ruvA) [Porphyromonas gingivalis ATCC 33277]
ATGATAGAGTATCTCAAGGGTGCAATAGTCGGTTTGACGCCGACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGA
TGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAG
AAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTC
GGGCCTACGACGGCACGGCTCATCCTATCCTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGA
TGCGCTGAAAGCAGTGAAGGGCATCGGCCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAACTGG
AAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAA
GCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCAGTCAAGTCCATTCTCTCCGAGGATTC
GTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTATAA

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (159-200)

• Helix-hairpin-helix domain (HHH_5) (71-128)

3D structure

• AlphaFold DB: B2RJ07

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	37.143	100	0.386
ruvA	Streptococcus pneumoniae TIGR4	37.624	100	0.376
ruvA	Streptococcus pneumoniae R6	37.129	100	0.371
ruvA	Streptococcus pneumoniae D39	37.129	100	0.371