Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C7M44_RS00015 | Genome accession | NZ_CP028254 |
| Coordinates | 1654..2127 (+) | Length | 157 a.a. |
| NCBI ID | WP_161506377.1 | Uniprot ID | - |
| Organism | Pediococcus pentosaceus strain SRCM102734 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 107..35512 | 1654..2127 | within | 0 |
Gene organization within MGE regions
Location: 107..35512
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7M44_RS00010 (C7M44_00002) | - | 794..1489 (+) | 696 | WP_161506376.1 | putative HNHc nuclease | - |
| C7M44_RS00015 (C7M44_00003) | ssb | 1654..2127 (+) | 474 | WP_161506377.1 | single-stranded DNA-binding protein | Machinery gene |
| C7M44_RS00020 (C7M44_00004) | - | 2139..2603 (+) | 465 | WP_161506378.1 | hypothetical protein | - |
| C7M44_RS00025 (C7M44_00005) | - | 2679..2906 (+) | 228 | WP_138428632.1 | hypothetical protein | - |
| C7M44_RS00030 (C7M44_00006) | - | 2884..3108 (+) | 225 | WP_138428631.1 | hypothetical protein | - |
| C7M44_RS00035 (C7M44_00007) | - | 3190..3633 (+) | 444 | WP_158190607.1 | hypothetical protein | - |
| C7M44_RS00045 (C7M44_00009) | - | 4525..5364 (+) | 840 | WP_161506379.1 | hypothetical protein | - |
| C7M44_RS00050 (C7M44_00010) | - | 5421..5657 (+) | 237 | WP_161506380.1 | hypothetical protein | - |
| C7M44_RS00055 (C7M44_00011) | - | 5635..5817 (+) | 183 | WP_161506381.1 | hypothetical protein | - |
| C7M44_RS00060 (C7M44_00012) | - | 5817..6494 (+) | 678 | WP_161506382.1 | terminase small subunit | - |
| C7M44_RS00065 | - | 6491..7866 (+) | 1376 | Protein_11 | PBSX family phage terminase large subunit | - |
| C7M44_RS00070 (C7M44_00015) | - | 7934..9487 (+) | 1554 | WP_161506383.1 | phage portal protein | - |
| C7M44_RS00075 (C7M44_00016) | - | 9487..10635 (+) | 1149 | WP_161506384.1 | phage minor capsid protein | - |
| C7M44_RS00080 (C7M44_00017) | - | 10765..11403 (+) | 639 | WP_161506385.1 | phage scaffolding protein | - |
| C7M44_RS00085 (C7M44_00018) | - | 11424..12491 (+) | 1068 | WP_161506386.1 | replication protein | - |
| C7M44_RS00090 (C7M44_00019) | - | 12645..13049 (+) | 405 | WP_161506387.1 | hypothetical protein | - |
| C7M44_RS00095 (C7M44_00020) | - | 13073..13429 (+) | 357 | WP_161506388.1 | putative minor capsid protein | - |
| C7M44_RS00100 (C7M44_00021) | - | 13430..13810 (+) | 381 | WP_161506389.1 | minor capsid protein | - |
| C7M44_RS00105 (C7M44_00022) | - | 13807..14208 (+) | 402 | WP_161506390.1 | hypothetical protein | - |
| C7M44_RS00110 (C7M44_00023) | - | 14223..15023 (+) | 801 | WP_161506391.1 | phage tail tube protein | - |
| C7M44_RS00115 (C7M44_00024) | - | 15113..15619 (+) | 507 | WP_161506392.1 | hypothetical protein | - |
| C7M44_RS00120 (C7M44_00025) | - | 15631..16245 (+) | 615 | WP_161506393.1 | Gp15 family bacteriophage protein | - |
| C7M44_RS00125 (C7M44_00026) | - | 16248..21065 (+) | 4818 | WP_161506394.1 | tape measure protein | - |
| C7M44_RS00130 (C7M44_00027) | - | 21058..23235 (+) | 2178 | WP_161506395.1 | distal tail protein Dit | - |
| C7M44_RS00135 (C7M44_00028) | - | 23250..25769 (+) | 2520 | WP_161506396.1 | phage tail spike protein | - |
| C7M44_RS00140 (C7M44_00029) | - | 25770..28934 (+) | 3165 | WP_161506397.1 | cell envelope integrity protein TolA | - |
| C7M44_RS00145 (C7M44_00030) | - | 28927..29154 (+) | 228 | WP_161506398.1 | hypothetical protein | - |
| C7M44_RS00150 (C7M44_00031) | - | 29147..29338 (+) | 192 | WP_029257967.1 | hypothetical protein | - |
| C7M44_RS00155 (C7M44_00032) | - | 29383..29631 (+) | 249 | WP_161506399.1 | hypothetical protein | - |
| C7M44_RS00160 (C7M44_00033) | - | 29670..29978 (+) | 309 | WP_159251049.1 | hypothetical protein | - |
| C7M44_RS00165 (C7M44_00034) | - | 29981..30214 (+) | 234 | WP_161506400.1 | phage holin | - |
| C7M44_RS00170 (C7M44_00035) | - | 30198..31340 (+) | 1143 | WP_161506401.1 | peptidoglycan recognition family protein | - |
| C7M44_RS00175 (C7M44_00036) | - | 32386..33666 (+) | 1281 | WP_161506402.1 | AbiH family protein | - |
| C7M44_RS00180 (C7M44_00037) | - | 34136..35512 (+) | 1377 | WP_002833594.1 | amino acid permease | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17800.53 Da Isoelectric Point: 6.9543
>NTDB_id=283739 C7M44_RS00015 WP_161506377.1 1654..2127(+) (ssb) [Pediococcus pentosaceus strain SRCM102734]
MINRTVLVGRLTNDPELKYTGSGVAVATFTVAVNRQFTNSQGEREADFIRCQMWRKAAENFCNFTHKGSLVGIDGRIQTR
SYDNQQGTRVFVTEVVAENFSLLESKNSSQNEQFEQNRPQNNGQNYQNKQNGQSSPSRNPNNPFNSMPDIKDDDLPF
MINRTVLVGRLTNDPELKYTGSGVAVATFTVAVNRQFTNSQGEREADFIRCQMWRKAAENFCNFTHKGSLVGIDGRIQTR
SYDNQQGTRVFVTEVVAENFSLLESKNSSQNEQFEQNRPQNNGQNYQNKQNGQSSPSRNPNNPFNSMPDIKDDDLPF
Nucleotide
Download Length: 474 bp
>NTDB_id=283739 C7M44_RS00015 WP_161506377.1 1654..2127(+) (ssb) [Pediococcus pentosaceus strain SRCM102734]
ATGATTAATCGAACGGTATTAGTCGGACGTTTAACTAACGATCCAGAACTAAAATATACAGGCAGCGGTGTGGCAGTTGC
AACTTTTACAGTAGCCGTTAATCGGCAATTTACTAATTCGCAAGGCGAACGTGAAGCAGATTTTATTAGATGCCAAATGT
GGCGCAAAGCTGCTGAGAACTTCTGTAACTTTACTCACAAAGGTTCACTGGTAGGAATTGATGGACGTATTCAAACTCGT
TCATACGATAATCAGCAAGGTACACGAGTTTTTGTTACTGAGGTCGTAGCTGAGAACTTCTCGCTACTTGAGTCCAAAAA
CAGTAGTCAAAATGAACAATTTGAACAGAATAGACCTCAAAACAATGGACAAAATTATCAGAATAAACAAAATGGTCAAT
CATCACCTAGCAGAAATCCTAACAACCCATTTAATAGCATGCCGGATATCAAGGATGACGATTTACCATTCTAG
ATGATTAATCGAACGGTATTAGTCGGACGTTTAACTAACGATCCAGAACTAAAATATACAGGCAGCGGTGTGGCAGTTGC
AACTTTTACAGTAGCCGTTAATCGGCAATTTACTAATTCGCAAGGCGAACGTGAAGCAGATTTTATTAGATGCCAAATGT
GGCGCAAAGCTGCTGAGAACTTCTGTAACTTTACTCACAAAGGTTCACTGGTAGGAATTGATGGACGTATTCAAACTCGT
TCATACGATAATCAGCAAGGTACACGAGTTTTTGTTACTGAGGTCGTAGCTGAGAACTTCTCGCTACTTGAGTCCAAAAA
CAGTAGTCAAAATGAACAATTTGAACAGAATAGACCTCAAAACAATGGACAAAATTATCAGAATAAACAAAATGGTCAAT
CATCACCTAGCAGAAATCCTAACAACCCATTTAATAGCATGCCGGATATCAAGGATGACGATTTACCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.611 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.714 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
67.516 |
0.376 |