Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EES41_RS26190 Genome accession   NZ_CP033581
Coordinates   5821455..5823089 (+) Length   544 a.a.
NCBI ID   WP_123080555.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5816455..5828089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS26160 (EES41_26160) lepB 5817340..5818298 (+) 959 Protein_5123 signal peptidase I -
  EES41_RS26165 (EES41_26165) lepB 5818222..5819127 (+) 906 WP_123080552.1 signal peptidase I -
  EES41_RS26170 (EES41_26170) lepB 5819169..5820032 (+) 864 WP_123080553.1 signal peptidase I -
  EES41_RS26175 (EES41_26175) - 5820022..5820531 (+) 510 WP_123080554.1 NUDIX hydrolase -
  EES41_RS26180 (EES41_26180) - 5820587..5820895 (+) 309 WP_008737534.1 DUF2469 domain-containing protein -
  EES41_RS26185 (EES41_26185) - 5821018..5821455 (+) 438 WP_250568483.1 YraN family protein -
  EES41_RS26190 (EES41_26190) comM 5821455..5823089 (+) 1635 WP_123080555.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EES41_RS26195 (EES41_26195) dprA 5823164..5824345 (+) 1182 WP_123080556.1 DNA-processing protein DprA -
  EES41_RS26200 (EES41_26200) whiG 5824555..5825391 (+) 837 WP_123080557.1 RNA polymerase sigma factor WhiG -
  EES41_RS26205 (EES41_26205) - 5825453..5826010 (+) 558 WP_123080558.1 TetR/AcrR family transcriptional regulator -
  EES41_RS26210 - 5826053..5826466 (-) 414 Protein_5133 murein hydrolase activator EnvC -
  EES41_RS26215 (EES41_26210) rpsB 5826718..5827659 (+) 942 WP_123080559.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 544 a.a.        Molecular weight: 56012.40 Da        Isoelectric Point: 7.0438

>NTDB_id=283631 EES41_RS26190 WP_123080555.1 5821455..5823089(+) (comM) [Streptomyces sp. ADI95-16]
MGFARACSVALVGVDGVVVEVQADLEPGVAAFTLVGLPDKTLVESRDRVRAAVVNSGAAWPQKKLTVGLSPASVPKGGAG
FDLAVAAAVLGAAEVVDPGAIADLVLIGELGLDGRVRPVRGILPAVLAAAEAGYRQVVVPQQCAAEATLVPDVSVLGVRS
LRQLIAVLTDGVVPEEEPPDPPGRPDPMLAGLIVPGAGLGTGLARGTGSEGEAPDHPDLSDVAGQHAARRALEVAAAGGH
HLFLSGPPGAGKTMLAERLPWILPPLTRQDSLEVTAVHSVAGILPPGEPLVTKAPYCAPHHSATMQSLVGGGAGVPRPGA
VSLAHRGVLFLDEAAEFSAKALDALRQPLESGHVVIARAAGVVRLPARFLMLLAANPCPCGRHNLQGAGCECPASVVRRY
QARLSGPLLDRVDLRVEVEPVTRSDLLGRGGRGEGTATVADRVREARARAAARLADTPWRLNSEVPGHELRTRWPAAPGA
LAQAERDLERGLLTARGLDRVLRVAWTVADLRGRDRPDALDVAVALELRTGIARGATLPPGAGS

Nucleotide


Download         Length: 1635 bp        

>NTDB_id=283631 EES41_RS26190 WP_123080555.1 5821455..5823089(+) (comM) [Streptomyces sp. ADI95-16]
ATGGGGTTCGCGCGAGCCTGCTCGGTCGCCCTCGTCGGCGTCGACGGCGTGGTGGTGGAGGTCCAGGCCGACCTGGAGCC
CGGGGTCGCCGCCTTCACCCTGGTCGGACTGCCCGACAAGACCCTCGTCGAAAGCCGGGACCGGGTGCGGGCGGCCGTGG
TGAACTCCGGCGCGGCCTGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGCCCCGCCTCCGTACCCAAGGGCGGCGCGGGC
TTCGACCTGGCGGTGGCCGCCGCCGTGCTGGGCGCCGCCGAGGTGGTCGACCCCGGAGCCATCGCCGACCTCGTGCTCAT
CGGGGAGCTCGGCCTGGACGGCCGGGTGCGCCCCGTGCGCGGCATCCTCCCGGCGGTCCTCGCGGCCGCGGAAGCCGGGT
ACCGGCAGGTGGTGGTCCCCCAGCAGTGCGCCGCCGAGGCCACGCTGGTCCCCGACGTGTCGGTGCTCGGGGTGCGCAGC
CTGCGGCAGTTGATCGCCGTGCTGACCGACGGGGTGGTGCCCGAGGAGGAACCCCCGGATCCACCGGGGCGACCGGATCC
GATGCTGGCCGGCCTGATCGTCCCCGGCGCCGGACTCGGCACGGGCCTGGCCCGGGGCACGGGGAGCGAGGGCGAAGCCC
CGGACCACCCCGACCTGTCCGACGTCGCCGGACAGCACGCCGCGCGCCGGGCCCTGGAGGTGGCCGCCGCCGGGGGACAC
CACCTCTTCCTCAGCGGGCCACCGGGCGCGGGCAAGACGATGCTGGCCGAACGGCTCCCGTGGATCCTGCCGCCGCTCAC
CCGGCAGGACTCGCTGGAGGTCACCGCCGTCCACTCGGTCGCGGGCATCCTCCCGCCCGGCGAACCGCTGGTCACCAAGG
CCCCGTACTGCGCCCCGCACCACTCGGCGACCATGCAGTCGCTGGTCGGGGGCGGGGCCGGGGTACCCAGGCCCGGGGCG
GTCTCCCTGGCCCATCGCGGCGTCCTCTTCCTGGACGAGGCCGCCGAGTTCAGCGCCAAGGCCCTGGACGCGCTGCGCCA
GCCCCTGGAGTCGGGGCACGTGGTGATCGCCCGCGCCGCCGGGGTGGTACGGCTGCCGGCCAGGTTCCTGATGCTGCTCG
CGGCCAACCCCTGCCCGTGCGGGAGGCACAACCTGCAAGGGGCCGGCTGCGAATGCCCGGCCTCCGTGGTGCGGCGCTAC
CAGGCGCGGCTGTCCGGCCCGCTGCTGGACCGGGTGGACCTGCGGGTGGAGGTAGAACCGGTCACCCGGTCCGACCTACT
GGGCCGGGGCGGCCGCGGGGAGGGCACGGCGACGGTCGCCGACCGGGTGCGGGAAGCCAGGGCCCGGGCCGCGGCGCGGC
TCGCCGACACCCCGTGGCGGCTCAACTCCGAGGTGCCCGGGCACGAACTGAGGACCCGCTGGCCGGCGGCCCCCGGAGCG
CTGGCCCAGGCCGAACGGGACCTGGAGCGGGGGCTGCTCACCGCGCGCGGGCTGGACCGGGTACTGCGGGTCGCCTGGAC
CGTGGCCGACCTCCGGGGCCGCGACCGCCCCGACGCGCTGGACGTGGCGGTGGCCCTGGAGCTGCGCACCGGCATCGCCC
GCGGCGCGACCCTGCCGCCCGGAGCCGGATCGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-424)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(433-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.623

97.426

0.386
  comM Acinetobacter baylyi ADP1

38.92

98.713

0.384
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.766

94.301

0.375
  comM Vibrio cholerae strain A1552

39.766

94.301

0.375
  comM Glaesserella parasuis strain SC1401

37.266

98.162

0.366