Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EES41_RS10655 Genome accession   NZ_CP033581
Coordinates   2455671..2457815 (-) Length   714 a.a.
NCBI ID   WP_123077561.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2450671..2462815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS10640 (EES41_10665) - 2451563..2452546 (-) 984 WP_123077555.1 TerC family protein -
  EES41_RS10645 (EES41_10670) - 2452851..2454947 (-) 2097 WP_123077557.1 TerD family protein -
  EES41_RS10650 (EES41_10675) - 2455007..2455585 (-) 579 WP_123077559.1 TerD family protein -
  EES41_RS10655 (EES41_10680) uvrB 2455671..2457815 (-) 2145 WP_123077561.1 excinuclease ABC subunit UvrB Machinery gene
  EES41_RS10660 (EES41_10685) - 2458096..2459016 (+) 921 WP_123077563.1 glycerophosphodiester phosphodiesterase family protein -
  EES41_RS10665 (EES41_10690) - 2459067..2459630 (+) 564 WP_123077565.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  EES41_RS10670 (EES41_10695) - 2459996..2461300 (+) 1305 WP_123077567.1 MFS transporter -
  EES41_RS10675 (EES41_10700) - 2461290..2461670 (-) 381 WP_123077569.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80045.00 Da        Isoelectric Point: 4.8680

>NTDB_id=283589 EES41_RS10655 WP_123077561.1 2455671..2457815(-) (uvrB) [Streptomyces sp. ADI95-16]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIAELEKRIRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVSLKVGEEIDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRELYVFPASHYVAGPERMEKAVAGIEAELTERLAELEKQGKMLEAQRLRMRTTYDLEMMRQIGSCSGIENYSLH
MDDRERGSAPNTLIDYFPEDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQGRIGQTVYL
SATPGKYELSRGDGFVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRARVEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKMTPAMEKAIEETNRRREKQVAYNTANGIDPQPLRKKINDIVATIAREEVDTEELLGTGYRQGKEAKAPVPALGGRAA
QAKGGKGAKGAKGAKAAEALTDRPAQELASLIEQMTERMRGAAAELQFEVAARIRDEVGELKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=283589 EES41_RS10655 WP_123077561.1 2455671..2457815(-) (uvrB) [Streptomyces sp. ADI95-16]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGAGAAGCGCATCCGTGCAGGTGAGAAGGATGTCGTCCTGCTGGGTGCGACCGGCACCGGCA
AGTCGGCGACCACGGCGTGGATGATCGAGAAGCTCCAGCGGCCCACGCTGGTGATGGCTCCGAACAAGACCCTCGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTACCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCCACGAACTCGCTGCTCACCCGGCGGGACGTCATCGTCGTCGCCTCCGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTCGACCGGATGGTCTCCCTCAAGGTGGGTGAGGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGCAACGACGTGGCCTTCACCCGGGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACGCTGCACCCGCTGACCGGC
GAGGTCATCAGCGAGGACCGCGAGCTGTACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCCGAGCGCATGGAGAAGGC
GGTCGCCGGCATCGAGGCCGAGCTGACGGAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCGCAGCGGC
TGCGCATGCGCACCACGTATGACCTGGAGATGATGCGTCAGATCGGCTCCTGCTCCGGTATCGAGAACTACTCGCTGCAC
ATGGACGACCGTGAGCGGGGCTCCGCGCCCAACACCCTCATCGACTATTTCCCGGAGGACTTCCTCCTAGTCATCGACGA
GTCGCACGTCACCGTTCCGCAGATCGGCGCGATGTACGAGGGTGACGCCTCGCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCGGCGCTCGACAACCGGCCGCTGAAGTGGGAGGAGTTCCAGGGGCGGATCGGCCAGACGGTCTACCTG
TCGGCCACCCCCGGCAAGTACGAGCTCTCGCGCGGCGACGGGTTCGTCGAACAGATCATCCGCCCCACCGGGCTCATCGA
CCCCGAGGTCGTGGTCAAGCCTACCGAGGGTCAGATCGACGACCTGGTGCACGAGATCCGCGCGCGCGTCGAGAAGGACG
AGCGGGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTGGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGGGCCGGCGAGTACGACGTACT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCGCTGGTGGCCATCCTCGACGCGGACAAGGAGG
GCTTCCTGCGCTCCGGGACCTCGCTCATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGCCAGGTCCACATGTAC
GCGGACAAGATGACCCCCGCGATGGAGAAGGCCATCGAGGAGACGAACCGGCGCCGCGAGAAGCAGGTCGCCTACAACAC
GGCCAACGGGATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTGGCCACCATCGCCCGCGAGGAGGTCGACA
CCGAGGAGCTGCTCGGCACCGGCTACCGGCAGGGCAAGGAGGCCAAGGCCCCGGTGCCCGCGCTCGGCGGCAGGGCCGCC
CAGGCCAAGGGCGGCAAGGGAGCCAAGGGAGCCAAGGGGGCCAAGGCCGCAGAGGCGCTCACCGACCGGCCGGCGCAGGA
ACTGGCCTCGCTCATCGAGCAGATGACCGAGCGGATGCGGGGTGCCGCGGCCGAGCTCCAGTTCGAGGTGGCCGCCCGGA
TCCGGGACGAGGTGGGCGAGCTGAAGAAGGAGCTGCGGCAGATGAAGGAAGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-145)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(443-551)

UvrB interaction domain (UvrB_inter)

(168-257)

UvrB/uvrC motif (UVR)

(670-704)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.143

97.059

0.555
  uvrB Streptococcus pneumoniae R6

57.143

97.059

0.555
  uvrB Streptococcus pneumoniae D39

57.143

97.059

0.555