Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C7M29_RS13470 Genome accession   NZ_CP028217
Coordinates   2587551..2587886 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM102751     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2582551..2592886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS13420 (C7M29_02634) comGC 2582569..2582865 (+) 297 WP_014114400.1 comG operon protein ComGC Machinery gene
  C7M29_RS13425 (C7M29_02635) comGD 2582855..2583286 (+) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  C7M29_RS13430 (C7M29_02636) comGE 2583270..2583617 (+) 348 WP_033884703.1 ComG operon protein 5 Machinery gene
  C7M29_RS13435 comGF 2583643..2584026 (+) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  C7M29_RS13440 (C7M29_02638) comGG 2584027..2584401 (+) 375 WP_033884701.1 ComG operon protein ComGG Machinery gene
  C7M29_RS13445 (C7M29_02639) spoIITA 2584473..2584652 (+) 180 WP_014480252.1 YqzE family protein -
  C7M29_RS13450 (C7M29_02640) yqzG 2584694..2585020 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  C7M29_RS13455 (C7M29_02641) tapA 2585292..2586053 (+) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  C7M29_RS13460 (C7M29_02642) sipW 2586037..2586609 (+) 573 WP_106073729.1 signal peptidase I SipW -
  C7M29_RS13465 (C7M29_02643) tasA 2586673..2587458 (+) 786 WP_161476870.1 biofilm matrix protein TasA -
  C7M29_RS13470 (C7M29_02644) sinR 2587551..2587886 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  C7M29_RS13475 (C7M29_02645) sinI 2587920..2588093 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  C7M29_RS13480 (C7M29_02646) yqhG 2588276..2589070 (-) 795 WP_003230200.1 YqhG family protein -
  C7M29_RS13485 (C7M29_02647) hepAA 2589091..2590764 (-) 1674 WP_003230203.1 SNF2-related protein -
  C7M29_RS13490 (C7M29_02648) gcvT 2591206..2592294 (+) 1089 WP_029317919.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=283360 C7M29_RS13470 WP_003226345.1 2587551..2587886(-) (sinR) [Bacillus subtilis strain SRCM102751]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=283360 C7M29_RS13470 WP_003226345.1 2587551..2587886(-) (sinR) [Bacillus subtilis strain SRCM102751]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment