Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C7M29_RS07940 Genome accession   NZ_CP028217
Coordinates   1530269..1531660 (+) Length   463 a.a.
NCBI ID   WP_161476662.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525269..1536660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS07920 (C7M29_01556) yvyE 1526422..1527075 (-) 654 WP_003227979.1 YigZ family protein -
  C7M29_RS07925 (C7M29_01557) degS 1527292..1528449 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M29_RS07930 (C7M29_01558) degU 1528532..1529221 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M29_RS07935 (C7M29_01559) fakBA 1529319..1530164 (+) 846 WP_161476661.1 DegV family protein -
  C7M29_RS07940 (C7M29_01560) comFA 1530269..1531660 (+) 1392 WP_161476662.1 ATP-dependent helicase ComFA Machinery gene
  C7M29_RS07945 (C7M29_01561) comFB 1531720..1532016 (+) 297 WP_161476663.1 late competence protein ComFB -
  C7M29_RS07950 (C7M29_01562) comFC 1531980..1532702 (+) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  C7M29_RS07955 (C7M29_01563) yvyF 1532776..1533195 (+) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  C7M29_RS07960 (C7M29_01564) flgM 1533276..1533542 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M29_RS07965 (C7M29_01565) flgN 1533558..1534040 (+) 483 WP_161476664.1 flagellar protein FlgN -
  C7M29_RS07970 (C7M29_01566) flgK 1534059..1535582 (+) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  C7M29_RS07975 (C7M29_01567) flgL 1535593..1536489 (+) 897 WP_161476665.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52519.47 Da        Isoelectric Point: 9.8891

>NTDB_id=283333 C7M29_RS07940 WP_161476662.1 1530269..1531660(+) (comFA) [Bacillus subtilis strain SRCM102751]
MNVPVEKNSSFSRELHQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=283333 C7M29_RS07940 WP_161476662.1 1530269..1531660(+) (comFA) [Bacillus subtilis strain SRCM102751]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCATCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGTAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.92

100

0.989

Multiple sequence alignment