Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M29_RS07950 Genome accession   NZ_CP028217
Coordinates   1531980..1532702 (+) Length   240 a.a.
NCBI ID   WP_038427947.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526980..1537702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS07925 (C7M29_01557) degS 1527292..1528449 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M29_RS07930 (C7M29_01558) degU 1528532..1529221 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M29_RS07935 (C7M29_01559) fakBA 1529319..1530164 (+) 846 WP_161476661.1 DegV family protein -
  C7M29_RS07940 (C7M29_01560) comFA 1530269..1531660 (+) 1392 WP_161476662.1 ATP-dependent helicase ComFA Machinery gene
  C7M29_RS07945 (C7M29_01561) comFB 1531720..1532016 (+) 297 WP_161476663.1 late competence protein ComFB -
  C7M29_RS07950 (C7M29_01562) comFC 1531980..1532702 (+) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  C7M29_RS07955 (C7M29_01563) yvyF 1532776..1533195 (+) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  C7M29_RS07960 (C7M29_01564) flgM 1533276..1533542 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M29_RS07965 (C7M29_01565) flgN 1533558..1534040 (+) 483 WP_161476664.1 flagellar protein FlgN -
  C7M29_RS07970 (C7M29_01566) flgK 1534059..1535582 (+) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  C7M29_RS07975 (C7M29_01567) flgL 1535593..1536489 (+) 897 WP_161476665.1 flagellar hook-associated protein FlgL -
  C7M29_RS07980 (C7M29_01568) yviE 1536536..1537111 (+) 576 WP_015384781.1 DUF6470 family protein -
  C7M29_RS07985 (C7M29_01569) fliW 1537132..1537563 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27424.72 Da        Isoelectric Point: 9.4911

>NTDB_id=283334 C7M29_RS07950 WP_038427947.1 1531980..1532702(+) (comFC) [Bacillus subtilis strain SRCM102751]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKQFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=283334 C7M29_RS07950 WP_038427947.1 1531980..1532702(+) (comFC) [Bacillus subtilis strain SRCM102751]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCAGTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment