Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EDM51_RS08580 Genome accession   NZ_CP033401
Coordinates   1582530..1583006 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC020031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1577530..1588006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EDM51_RS08535 (EDM51_08535) ghrA 1577655..1578593 (-) 939 WP_000351311.1 glyoxylate/hydroxypyruvate reductase GhrA -
  EDM51_RS08545 (EDM51_08545) - 1579064..1579905 (-) 842 Protein_1494 DUF4942 domain-containing protein -
  EDM51_RS08550 (EDM51_08550) - 1579990..1580187 (-) 198 WP_000839253.1 DUF957 domain-containing protein -
  EDM51_RS08555 (EDM51_08555) - 1580204..1580692 (-) 489 WP_032180032.1 DUF5983 family protein -
  EDM51_RS08560 (EDM51_08560) - 1580689..1581072 (-) 384 WP_000854686.1 TA system toxin CbtA family protein -
  EDM51_RS08565 (EDM51_08565) - 1581153..1581533 (-) 381 WP_001285602.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EDM51_RS08570 (EDM51_08570) - 1581544..1582227 (-) 684 WP_000086768.1 hypothetical protein -
  EDM51_RS08575 (EDM51_08575) - 1582246..1582467 (-) 222 WP_000692298.1 DUF987 domain-containing protein -
  EDM51_RS08580 (EDM51_08580) radC 1582530..1583006 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  EDM51_RS08585 (EDM51_08585) - 1583022..1583507 (-) 486 WP_000214307.1 antirestriction protein -
  EDM51_RS08590 (EDM51_08590) - 1583599..1584420 (-) 822 WP_001761104.1 DUF932 domain-containing protein -
  EDM51_RS08600 (EDM51_08600) - 1584521..1584729 (-) 209 Protein_1504 DUF905 family protein -
  EDM51_RS08605 (EDM51_08605) - 1584830..1585285 (-) 456 WP_000581506.1 IrmA family protein -
  EDM51_RS08610 (EDM51_08610) - 1585361..1587877 (-) 2517 WP_001531238.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=283334 EDM51_RS08580 WP_001186726.1 1582530..1583006(-) (radC) [Escherichia coli strain WCHEC020031]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=283334 EDM51_RS08580 WP_001186726.1 1582530..1583006(-) (radC) [Escherichia coli strain WCHEC020031]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment