Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M29_RS07930 Genome accession   NZ_CP028217
Coordinates   1528532..1529221 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM102751     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1523532..1534221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS07910 (C7M29_01554) tagO 1524098..1525174 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C7M29_RS07915 (C7M29_01555) tagV 1525247..1526422 (-) 1176 WP_161476660.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C7M29_RS07920 (C7M29_01556) yvyE 1526422..1527075 (-) 654 WP_003227979.1 YigZ family protein -
  C7M29_RS07925 (C7M29_01557) degS 1527292..1528449 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M29_RS07930 (C7M29_01558) degU 1528532..1529221 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M29_RS07935 (C7M29_01559) fakBA 1529319..1530164 (+) 846 WP_161476661.1 DegV family protein -
  C7M29_RS07940 (C7M29_01560) comFA 1530269..1531660 (+) 1392 WP_161476662.1 ATP-dependent helicase ComFA Machinery gene
  C7M29_RS07945 (C7M29_01561) comFB 1531720..1532016 (+) 297 WP_161476663.1 late competence protein ComFB -
  C7M29_RS07950 (C7M29_01562) comFC 1531980..1532702 (+) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  C7M29_RS07955 (C7M29_01563) yvyF 1532776..1533195 (+) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  C7M29_RS07960 (C7M29_01564) flgM 1533276..1533542 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M29_RS07965 (C7M29_01565) flgN 1533558..1534040 (+) 483 WP_161476664.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=283332 C7M29_RS07930 WP_003219701.1 1528532..1529221(+) (degU) [Bacillus subtilis strain SRCM102751]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=283332 C7M29_RS07930 WP_003219701.1 1528532..1529221(+) (degU) [Bacillus subtilis strain SRCM102751]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment