Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M27_RS00340 Genome accession   NZ_CP028213
Coordinates   76481..77203 (+) Length   240 a.a.
NCBI ID   WP_124047882.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 71481..82203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS00315 (C7M27_00063) degS 71790..72947 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M27_RS00320 (C7M27_00064) degU 73030..73719 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M27_RS00325 (C7M27_00065) fakBA 73817..74662 (+) 846 WP_003227986.1 DegV family protein -
  C7M27_RS00330 (C7M27_00066) comFA 74770..76161 (+) 1392 WP_128740769.1 ATP-dependent helicase ComFA Machinery gene
  C7M27_RS00335 (C7M27_00067) comFB 76221..76517 (+) 297 WP_003227989.1 late competence protein ComFB -
  C7M27_RS00340 (C7M27_00068) comFC 76481..77203 (+) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  C7M27_RS00345 (C7M27_00069) yvyF 77277..77696 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M27_RS00350 (C7M27_00070) flgM 77777..78043 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M27_RS00355 (C7M27_00071) flgN 78059..78541 (+) 483 WP_014481048.1 flagellar protein FlgN -
  C7M27_RS00360 (C7M27_00072) flgK 78560..80083 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C7M27_RS00365 (C7M27_00073) flgL 80094..80990 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  C7M27_RS00370 (C7M27_00074) yviE 81037..81612 (+) 576 WP_015384781.1 DUF6470 family protein -
  C7M27_RS00375 (C7M27_00075) fliW 81633..82064 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27522.77 Da        Isoelectric Point: 9.1349

>NTDB_id=283150 C7M27_RS00340 WP_124047882.1 76481..77203(+) (comFC) [Bacillus subtilis strain SRCM102749]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=283150 C7M27_RS00340 WP_124047882.1 76481..77203(+) (comFC) [Bacillus subtilis strain SRCM102749]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment