Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M27_RS00320 Genome accession   NZ_CP028213
Coordinates   73030..73719 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM102749     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 68030..78719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS00300 (C7M27_00060) tagO 68596..69672 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C7M27_RS00305 (C7M27_00061) tagV 69745..70920 (-) 1176 WP_103803401.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C7M27_RS00310 (C7M27_00062) yvyE 70920..71573 (-) 654 WP_003227979.1 YigZ family protein -
  C7M27_RS00315 (C7M27_00063) degS 71790..72947 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M27_RS00320 (C7M27_00064) degU 73030..73719 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M27_RS00325 (C7M27_00065) fakBA 73817..74662 (+) 846 WP_003227986.1 DegV family protein -
  C7M27_RS00330 (C7M27_00066) comFA 74770..76161 (+) 1392 WP_128740769.1 ATP-dependent helicase ComFA Machinery gene
  C7M27_RS00335 (C7M27_00067) comFB 76221..76517 (+) 297 WP_003227989.1 late competence protein ComFB -
  C7M27_RS00340 (C7M27_00068) comFC 76481..77203 (+) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  C7M27_RS00345 (C7M27_00069) yvyF 77277..77696 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M27_RS00350 (C7M27_00070) flgM 77777..78043 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M27_RS00355 (C7M27_00071) flgN 78059..78541 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=283148 C7M27_RS00320 WP_003219701.1 73030..73719(+) (degU) [Bacillus subtilis strain SRCM102749]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=283148 C7M27_RS00320 WP_003219701.1 73030..73719(+) (degU) [Bacillus subtilis strain SRCM102749]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment