Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M26_RS17285 Genome accession   NZ_CP028212
Coordinates   3295412..3296134 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3290412..3301134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS17260 (C7M26_03391) degS 3290723..3291880 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M26_RS17265 (C7M26_03392) degU 3291963..3292652 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M26_RS17270 (C7M26_03393) fakBA 3292750..3293595 (+) 846 WP_003244125.1 DegV family protein -
  C7M26_RS17275 (C7M26_03394) comFA 3293701..3295092 (+) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  C7M26_RS17280 (C7M26_03395) comFB 3295152..3295448 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M26_RS17285 (C7M26_03396) comFC 3295412..3296134 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C7M26_RS17290 (C7M26_03397) yvyF 3296207..3296626 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M26_RS17295 (C7M26_03398) flgM 3296707..3296973 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M26_RS17300 (C7M26_03399) flgN 3296989..3297471 (+) 483 WP_032722609.1 flagellar protein FlgN -
  C7M26_RS17305 (C7M26_03400) flgK 3297490..3299013 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C7M26_RS17310 (C7M26_03401) flgL 3299024..3299920 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  C7M26_RS17315 (C7M26_03402) yviE 3299967..3300542 (+) 576 WP_003243053.1 DUF6470 family protein -
  C7M26_RS17320 (C7M26_03403) fliW 3300563..3300994 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=283132 C7M26_RS17285 WP_014481051.1 3295412..3296134(+) (comFC) [Bacillus subtilis strain SRCM102748]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=283132 C7M26_RS17285 WP_014481051.1 3295412..3296134(+) (comFC) [Bacillus subtilis strain SRCM102748]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment