Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M26_RS17265 Genome accession   NZ_CP028212
Coordinates   3291963..3292652 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM102748     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3286963..3297652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS17245 (C7M26_03388) tagO 3287529..3288605 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C7M26_RS17250 (C7M26_03389) tagV 3288678..3289853 (-) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C7M26_RS17255 (C7M26_03390) yvyE 3289853..3290506 (-) 654 WP_003227979.1 YigZ family protein -
  C7M26_RS17260 (C7M26_03391) degS 3290723..3291880 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M26_RS17265 (C7M26_03392) degU 3291963..3292652 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M26_RS17270 (C7M26_03393) fakBA 3292750..3293595 (+) 846 WP_003244125.1 DegV family protein -
  C7M26_RS17275 (C7M26_03394) comFA 3293701..3295092 (+) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  C7M26_RS17280 (C7M26_03395) comFB 3295152..3295448 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M26_RS17285 (C7M26_03396) comFC 3295412..3296134 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C7M26_RS17290 (C7M26_03397) yvyF 3296207..3296626 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M26_RS17295 (C7M26_03398) flgM 3296707..3296973 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M26_RS17300 (C7M26_03399) flgN 3296989..3297471 (+) 483 WP_032722609.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=283130 C7M26_RS17265 WP_003219701.1 3291963..3292652(+) (degU) [Bacillus subtilis strain SRCM102748]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=283130 C7M26_RS17265 WP_003219701.1 3291963..3292652(+) (degU) [Bacillus subtilis strain SRCM102748]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment