Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C7M26_RS17275 Genome accession   NZ_CP028212
Coordinates   3293701..3295092 (+) Length   463 a.a.
NCBI ID   WP_089172669.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3288701..3300092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS17255 (C7M26_03390) yvyE 3289853..3290506 (-) 654 WP_003227979.1 YigZ family protein -
  C7M26_RS17260 (C7M26_03391) degS 3290723..3291880 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M26_RS17265 (C7M26_03392) degU 3291963..3292652 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M26_RS17270 (C7M26_03393) fakBA 3292750..3293595 (+) 846 WP_003244125.1 DegV family protein -
  C7M26_RS17275 (C7M26_03394) comFA 3293701..3295092 (+) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  C7M26_RS17280 (C7M26_03395) comFB 3295152..3295448 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M26_RS17285 (C7M26_03396) comFC 3295412..3296134 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C7M26_RS17290 (C7M26_03397) yvyF 3296207..3296626 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M26_RS17295 (C7M26_03398) flgM 3296707..3296973 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M26_RS17300 (C7M26_03399) flgN 3296989..3297471 (+) 483 WP_032722609.1 flagellar protein FlgN -
  C7M26_RS17305 (C7M26_03400) flgK 3297490..3299013 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C7M26_RS17310 (C7M26_03401) flgL 3299024..3299920 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52587.68 Da        Isoelectric Point: 10.0153

>NTDB_id=283131 C7M26_RS17275 WP_089172669.1 3293701..3295092(+) (comFA) [Bacillus subtilis strain SRCM102748]
MNVPVEKNGSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHIKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=283131 C7M26_RS17275 WP_089172669.1 3293701..3295092(+) (comFA) [Bacillus subtilis strain SRCM102748]
GTGAATGTGCCAGTTGAAAAAAACGGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATATAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(327-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991

Multiple sequence alignment