Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EB817_RS08795 Genome accession   NZ_CP033336
Coordinates   1729988..1730584 (-) Length   198 a.a.
NCBI ID   WP_053308677.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1724988..1735584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB817_RS08760 (EB817_08775) - 1725048..1725353 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  EB817_RS08765 (EB817_08780) ruvX 1725365..1725784 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  EB817_RS08770 (EB817_08785) - 1725781..1726050 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  EB817_RS08775 (EB817_08790) spx 1726164..1726562 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  EB817_RS08780 (EB817_08795) recA 1726853..1727989 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  EB817_RS08785 (EB817_08800) cinA 1728078..1729349 (-) 1272 WP_032459984.1 competence/damage-inducible protein A Machinery gene
  EB817_RS08790 (EB817_08805) - 1729418..1729978 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  EB817_RS08795 (EB817_08810) ruvA 1729988..1730584 (-) 597 WP_053308677.1 Holliday junction branch migration protein RuvA Machinery gene
  EB817_RS08800 (EB817_08815) - 1730586..1731806 (-) 1221 WP_002992187.1 MFS transporter -
  EB817_RS08805 (EB817_08820) hexB 1731817..1733799 (-) 1983 WP_129304964.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21799.13 Da        Isoelectric Point: 6.2537

>NTDB_id=283124 EB817_RS08795 WP_053308677.1 1729988..1730584(-) (ruvA) [Streptococcus pyogenes strain TSPY165]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=283124 EB817_RS08795 WP_053308677.1 1729988..1730584(-) (ruvA) [Streptococcus pyogenes strain TSPY165]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT
GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment